Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   U6209_RS04410 Genome accession   NZ_CP140705
Coordinates   973795..974196 (+) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas sp. B188     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 968795..979196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6209_RS04380 - 968857..969861 (-) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -
  U6209_RS04385 pyrR 969874..970392 (-) 519 WP_003249313.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  U6209_RS04390 ruvX 970442..970867 (-) 426 WP_010955563.1 Holliday junction resolvase RuvX -
  U6209_RS04395 - 970867..971436 (-) 570 WP_003249318.1 YqgE/AlgH family protein -
  U6209_RS04400 - 971606..972511 (-) 906 WP_010955562.1 energy transducer TonB -
  U6209_RS04405 gshB 972603..973556 (-) 954 WP_010955561.1 glutathione synthase -
  U6209_RS04410 pilG 973795..974196 (+) 402 WP_010955560.1 response regulator Regulator
  U6209_RS04415 pilH 974244..974609 (+) 366 WP_003249327.1 twitching motility response regulator PilH -
  U6209_RS04420 - 974606..975160 (+) 555 WP_010955559.1 chemotaxis protein CheW -
  U6209_RS04425 - 975208..977232 (+) 2025 WP_232014163.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=915012 U6209_RS04410 WP_010955560.1 973795..974196(+) (pilG) [Pseudomonas sp. B188]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=915012 U6209_RS04410 WP_010955560.1 973795..974196(+) (pilG) [Pseudomonas sp. B188]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
GCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632