Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   V5122_RS10405 Genome accession   NZ_CP159797
Coordinates   2094012..2094728 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   P0A0I7
Organism   Staphylococcus aureus strain BSN38-MRSA1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089012..2099728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5122_RS10375 (V5122_10375) - 2089231..2089857 (+) 627 WP_000522384.1 nitroreductase family protein -
  V5122_RS10380 (V5122_10380) - 2090218..2091003 (+) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  V5122_RS10385 (V5122_10385) - 2091600..2091734 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  V5122_RS10390 (V5122_10390) agrB 2091970..2092539 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  V5122_RS10395 (V5122_10395) agrD 2092536..2092676 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  V5122_RS10400 (V5122_10400) agrC 2092701..2093993 (+) 1293 WP_001549202.1 quorum-sensing sensor histidine kinase AgrC -
  V5122_RS10405 (V5122_10405) agrA 2094012..2094728 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  V5122_RS10410 (V5122_10410) - 2094800..2094907 (+) 108 WP_001790167.1 hypothetical protein -
  V5122_RS10415 (V5122_10415) - 2095095..2096054 (-) 960 WP_001253312.1 carbohydrate kinase -
  V5122_RS10420 (V5122_10420) - 2096051..2097535 (-) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  V5122_RS10425 (V5122_10425) - 2097684..2098634 (-) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=914976 V5122_RS10405 WP_000688492.1 2094012..2094728(+) (agrA) [Staphylococcus aureus strain BSN38-MRSA1]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=914976 V5122_RS10405 WP_000688492.1 2094012..2094728(+) (agrA) [Staphylococcus aureus strain BSN38-MRSA1]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3BS1
  PDB 4G4K

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1