Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   L6430_RS20685 Genome accession   NZ_AP025342
Coordinates   4107886..4108656 (-) Length   256 a.a.
NCBI ID   WP_065644189.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4102886..4113656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS20665 - 4102961..4103773 (-) 813 WP_020452237.1 pyruvate, water dikinase regulatory protein -
  L6430_RS20670 - 4103799..4104437 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  L6430_RS20675 glyS 4104635..4106674 (-) 2040 WP_065644187.1 glycine--tRNA ligase subunit beta -
  L6430_RS20680 glyQ 4106667..4107554 (-) 888 WP_065644188.1 glycine--tRNA ligase subunit alpha -
  L6430_RS20685 recO 4107886..4108656 (-) 771 WP_065644189.1 DNA repair protein RecO Machinery gene
  L6430_RS20690 - 4108694..4108837 (-) 144 WP_003183626.1 YqzL family protein -
  L6430_RS20695 era 4108999..4109904 (-) 906 WP_023855242.1 GTPase Era -
  L6430_RS20700 - 4109885..4110295 (-) 411 WP_065644190.1 cytidine deaminase -
  L6430_RS20705 - 4110428..4110808 (-) 381 WP_065644191.1 diacylglycerol kinase family protein -
  L6430_RS20710 ybeY 4110786..4111262 (-) 477 WP_065644192.1 rRNA maturation RNase YbeY -
  L6430_RS20715 - 4111259..4113313 (-) 2055 WP_223254788.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29444.10 Da        Isoelectric Point: 7.9535

>NTDB_id=91495 L6430_RS20685 WP_065644189.1 4107886..4108656(-) (recO) [Bacillus paralicheniformis strain J41TS8]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRH
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLDDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSICDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=91495 L6430_RS20685 WP_065644189.1 4107886..4108656(-) (recO) [Bacillus paralicheniformis strain J41TS8]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCTCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGCAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGCAT
ATACGCGAGGATCTGTTTTTAACAGCATATGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCGATGAGGAGGCTCGATGACGGTACAGATCCCGACATTATCGCCAACC
TTATCGAAGTTAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATTTGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGGCTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTCATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.344

100

0.773

Multiple sequence alignment