Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   V5122_RS06310 Genome accession   NZ_CP159797
Coordinates   1298653..1299804 (+) Length   383 a.a.
NCBI ID   WP_335570412.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN38-MRSA1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1293653..1304804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5122_RS06285 (V5122_06285) - 1294481..1295767 (+) 1287 WP_000664764.1 pitrilysin family protein -
  V5122_RS06290 (V5122_06290) - 1295767..1296471 (+) 705 WP_000646227.1 SDR family NAD(P)-dependent oxidoreductase -
  V5122_RS06295 (V5122_06295) - 1296576..1297403 (+) 828 WP_000214890.1 YmfK family protein -
  V5122_RS06300 (V5122_06300) - 1297422..1297814 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  V5122_RS06305 (V5122_06305) pgsA 1297848..1298426 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V5122_RS06310 (V5122_06310) cinA 1298653..1299804 (+) 1152 WP_335570412.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  V5122_RS06315 (V5122_06315) recA 1299969..1301012 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  V5122_RS06320 (V5122_06320) rny 1301366..1302925 (+) 1560 WP_001050913.1 ribonuclease Y -
  V5122_RS06325 (V5122_06325) - 1303222..1303437 (-) 216 WP_000026308.1 hypothetical protein -
  V5122_RS06330 (V5122_06330) - 1303611..1304408 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43253.52 Da        Isoelectric Point: 6.1914

>NTDB_id=914937 V5122_RS06310 WP_335570412.1 1298653..1299804(+) (cinA) [Staphylococcus aureus strain BSN38-MRSA1]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVVLTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=914937 V5122_RS06310 WP_335570412.1 1298653..1299804(+) (cinA) [Staphylococcus aureus strain BSN38-MRSA1]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTGTTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTTCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

39.903

100

0.428