Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   SFB89_RS05095 Genome accession   NZ_CP140614
Coordinates   1033870..1034253 (+) Length   127 a.a.
NCBI ID   WP_331775869.1    Uniprot ID   -
Organism   Sulfurospirillum sp. 1612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028870..1039253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFB89_RS05080 (SFB89_05080) ilvC 1030911..1031933 (+) 1023 WP_331775866.1 ketol-acid reductoisomerase -
  SFB89_RS05085 (SFB89_05085) - 1031999..1033111 (+) 1113 WP_331775867.1 divergent polysaccharide deacetylase family protein -
  SFB89_RS05090 (SFB89_05090) - 1033112..1033873 (+) 762 WP_331775868.1 DNA-processing protein DprA -
  SFB89_RS05095 (SFB89_05095) dprB 1033870..1034253 (+) 384 WP_331775869.1 Holliday junction resolvase RuvX Machinery gene
  SFB89_RS05100 (SFB89_05100) - 1034245..1034586 (-) 342 WP_331775870.1 arsenate reductase family protein -
  SFB89_RS05105 (SFB89_05105) - 1034654..1034935 (+) 282 WP_331775871.1 flagellar basal body rod C-terminal domain-containing protein -
  SFB89_RS05110 (SFB89_05110) queA 1034940..1035959 (-) 1020 WP_331776055.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SFB89_RS05115 (SFB89_05115) tatC 1035967..1036758 (-) 792 WP_331775872.1 twin-arginine translocase subunit TatC -
  SFB89_RS05120 (SFB89_05120) tatB 1036761..1037204 (-) 444 WP_331775873.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14451.73 Da        Isoelectric Point: 8.0295

>NTDB_id=914880 SFB89_RS05095 WP_331775869.1 1033870..1034253(+) (dprB) [Sulfurospirillum sp. 1612]
MIYASIDVGLKRIGVAVCLDGKIVFPKDAIMRKNRQQAARDVDDFLQEWHVDVLVVGLPQSGSSAQEMQRRIRHFVSLLD
FDQKIAFQDEYGSSLEAQEMMKGITKQRKDGKIDSLAAKIILERWLS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=914880 SFB89_RS05095 WP_331775869.1 1033870..1034253(+) (dprB) [Sulfurospirillum sp. 1612]
ATGATTTATGCCAGTATCGATGTGGGGTTGAAACGCATCGGTGTAGCCGTTTGTTTAGATGGGAAAATCGTATTTCCAAA
AGATGCCATCATGCGCAAAAATAGACAACAAGCCGCACGGGATGTTGATGATTTTTTGCAAGAGTGGCATGTGGATGTTT
TGGTTGTGGGCCTTCCCCAAAGTGGCAGTAGTGCCCAGGAGATGCAGCGTCGAATTCGCCATTTTGTTTCACTGTTAGAT
TTTGATCAAAAGATAGCCTTTCAAGATGAATACGGAAGCAGTCTTGAAGCCCAAGAGATGATGAAAGGCATCACCAAGCA
GAGAAAAGATGGTAAAATCGATTCTCTAGCGGCAAAGATTATTTTAGAGCGGTGGTTATCTTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(1-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.923

100

0.48