Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   L6430_RS17135 Genome accession   NZ_AP025342
Coordinates   3364333..3364761 (+) Length   142 a.a.
NCBI ID   WP_145685458.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3359333..3369761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS17105 - 3359588..3360196 (+) 609 WP_023857599.1 flavin reductase family protein -
  L6430_RS17110 wrbA 3360398..3361012 (+) 615 WP_026579653.1 NAD(P)H:quinone oxidoreductase -
  L6430_RS17115 - 3361323..3361463 (+) 141 WP_023857597.1 hypothetical protein -
  L6430_RS17120 - 3361456..3362289 (+) 834 WP_020451587.1 prohibitin family protein -
  L6430_RS17125 - 3362378..3363139 (+) 762 WP_025809940.1 hypothetical protein -
  L6430_RS17130 - 3363199..3364038 (+) 840 WP_026579651.1 thymidylate synthase -
  L6430_RS17135 nucA/comI 3364333..3364761 (+) 429 WP_145685458.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L6430_RS17140 lexA 3364959..3365582 (-) 624 WP_020451591.1 transcriptional repressor LexA -
  L6430_RS17145 yneA 3365735..3366046 (+) 312 WP_020451592.1 cell division suppressor protein YneA -
  L6430_RS17150 - 3366065..3366712 (+) 648 WP_020451593.1 YneB family resolvase-like protein -
  L6430_RS17155 - 3366778..3367011 (+) 234 WP_020451594.1 DUF896 domain-containing protein -
  L6430_RS17160 tkt 3367175..3369178 (+) 2004 WP_079289398.1 transketolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15438.37 Da        Isoelectric Point: 7.8950

>NTDB_id=91486 L6430_RS17135 WP_145685458.1 3364333..3364761(+) (nucA/comI) [Bacillus paralicheniformis strain J41TS8]
MIKKWAVHLLFSALVLLGLSGGAAYSSQHAEGVARYDDVLYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSDYADGTRILFIVR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=91486 L6430_RS17135 WP_145685458.1 3364333..3364761(+) (nucA/comI) [Bacillus paralicheniformis strain J41TS8]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTGCTGCTTGGGCTTTCGGGAGGGGCTGCATATTCTTC
TCAGCATGCCGAAGGCGTTGCAAGGTATGATGACGTATTGTATTTTCCGGCATCGCGCTATCCTGAAACCGGTGCTCATA
TAAGCGATGCGATCAAAGCGGGCCATTCAGATGTCTGCACAATTGAAAGATCTGGAGCGGATAAGCGCCGTCAGGAATCA
TTAAAAGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGAGGAAAAGGAGC
GTCGGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGATTACGCTGACG
GGACGAGAATTTTGTTTATCGTTCGATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

88.732

0.528

Multiple sequence alignment