Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   L6430_RS17020 Genome accession   NZ_AP025342
Coordinates   3348134..3348610 (+) Length   158 a.a.
NCBI ID   WP_026579660.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3343134..3353610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS16985 - 3343249..3343677 (+) 429 WP_026579666.1 HIT domain-containing protein -
  L6430_RS16990 - 3344308..3344610 (+) 303 WP_039072733.1 hypothetical protein -
  L6430_RS16995 - 3344851..3345821 (+) 971 Protein_3319 alpha/beta hydrolase family protein -
  L6430_RS17000 - 3345881..3346102 (+) 222 WP_026579662.1 hypothetical protein -
  L6430_RS17005 - 3346213..3346809 (+) 597 WP_145685451.1 SAM-dependent methyltransferase -
  L6430_RS17010 - 3346915..3347397 (+) 483 WP_145685454.1 DUF4944 domain-containing protein -
  L6430_RS17015 - 3347431..3348003 (+) 573 WP_145685455.1 GNAT family N-acetyltransferase -
  L6430_RS17020 rok 3348134..3348610 (+) 477 WP_026579660.1 hypothetical protein Regulator
  L6430_RS17025 - 3348730..3348903 (+) 174 WP_165389276.1 hypothetical protein -
  L6430_RS17030 - 3349256..3349876 (-) 621 WP_020451570.1 hypothetical protein -
  L6430_RS17035 - 3350437..3351021 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  L6430_RS17040 - 3351102..3351434 (+) 333 WP_020451572.1 DMT family transporter -
  L6430_RS17045 - 3351437..3351754 (+) 318 WP_020451573.1 DMT family transporter -
  L6430_RS17050 speG 3351783..3352325 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  L6430_RS17055 - 3352362..3352688 (-) 327 WP_217626321.1 YxeA family protein -
  L6430_RS17060 - 3352898..3353338 (+) 441 WP_039072735.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18313.17 Da        Isoelectric Point: 10.0055

>NTDB_id=91485 L6430_RS17020 WP_026579660.1 3348134..3348610(+) (rok) [Bacillus paralicheniformis strain J41TS8]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQIAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=91485 L6430_RS17020 WP_026579660.1 3348134..3348610(+) (rok) [Bacillus paralicheniformis strain J41TS8]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
GAAAGAACGACAAGACATTTATTCGAAGCTGCGTGAATTGGATCGGGAGAGTGATCCCGCAATTAACAAAAAATCTTCAT
TAATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAGATTGCCGCTGACAAACATCCGCCCATCAAAACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGTGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACAACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAACCTGCCCGCGGCCATTATATTTTGCAAAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

43.407

100

0.5

Multiple sequence alignment