Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L6430_RS15985 Genome accession   NZ_AP025342
Coordinates   3147027..3147929 (+) Length   300 a.a.
NCBI ID   WP_065644124.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3142027..3152929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS15965 - 3142679..3144376 (+) 1698 WP_065644123.1 hypothetical protein -
  L6430_RS15970 - 3144373..3144657 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  L6430_RS15975 sucC 3144833..3145993 (+) 1161 WP_020451378.1 ADP-forming succinate--CoA ligase subunit beta -
  L6430_RS15980 sucD 3146012..3146914 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  L6430_RS15985 dprA 3147027..3147929 (+) 903 WP_065644124.1 DNA-processing protein DprA Machinery gene
  L6430_RS15990 topA 3148132..3150207 (+) 2076 WP_065644125.1 type I DNA topoisomerase -
  L6430_RS15995 trmFO 3150283..3151587 (+) 1305 WP_065644126.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  L6430_RS16000 xerC 3151654..3152568 (+) 915 WP_065644127.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33210.58 Da        Isoelectric Point: 10.1643

>NTDB_id=91481 L6430_RS15985 WP_065644124.1 3147027..3147929(+) (dprA) [Bacillus paralicheniformis strain J41TS8]
MNESSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKQLIRSYEAAGVRM
TAICSPDYPASLKTIHDPPPVLFLKGNVKLLHEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPDVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDASSFGPSRLIQEGAKLVLNIEDILSELPPSRTQYIEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=91481 L6430_RS15985 WP_065644124.1 3147027..3147929(+) (dprA) [Bacillus paralicheniformis strain J41TS8]
ATGAACGAAAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACAGCTCATCCGTTCTTACGAAGCAGCCGGTGTCCGCATG
ACCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CGTTAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCCCAT
CAGGAGAGCATCCGTTCAAAAGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACACCG
CCAGCTTGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCGACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACCGCATATCAGGCCCTAGAGCAGGGGCGGGAGGTGTTCGCGGTGCCGGGTCCGATCTTTGACGCCAGCTCGTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATAGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATATAGAACCGGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

56.856

99.667

0.567
  dprA Haemophilus influenzae Rd KW20

46.186

78.667

0.363

Multiple sequence alignment