Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   S0I03_RS01760 Genome accession   NZ_CP140613
Coordinates   331249..331686 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain WN-I     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326249..336686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S0I03_RS01735 - 327269..328405 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  S0I03_RS01740 - 328420..328854 (+) 435 WP_014416871.1 RDD family protein -
  S0I03_RS01745 - 328971..329249 (+) 279 WP_263612330.1 YckD family protein -
  S0I03_RS01750 - 329353..330789 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  S0I03_RS01755 nin/comJ 330830..331228 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  S0I03_RS01760 nucA/comI 331249..331686 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  S0I03_RS01765 hxlB 332017..332574 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  S0I03_RS01770 hxlA 332571..333206 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  S0I03_RS01775 - 333438..333800 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=914808 S0I03_RS01760 WP_003156588.1 331249..331686(-) (nucA/comI) [Bacillus velezensis strain WN-I]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=914808 S0I03_RS01760 WP_003156588.1 331249..331686(-) (nucA/comI) [Bacillus velezensis strain WN-I]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641