Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6430_RS15175 Genome accession   NZ_AP025342
Coordinates   2983526..2983813 (+) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978526..2988813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS15155 - 2980186..2980560 (+) 375 WP_081303569.1 YybH family protein -
  L6430_RS15160 - 2980686..2981918 (-) 1233 WP_065644048.1 aminopeptidase -
  L6430_RS15165 - 2982008..2982139 (-) 132 WP_003181378.1 protein YkpC -
  L6430_RS15170 mreBH 2982213..2983220 (-) 1008 WP_003181381.1 rod-share determining protein MreBH -
  L6430_RS15175 abrB 2983526..2983813 (+) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6430_RS15180 - 2983981..2985318 (+) 1338 WP_212930438.1 ATP-binding protein -
  L6430_RS15185 - 2985382..2986044 (+) 663 WP_020451237.1 potassium channel family protein -
  L6430_RS15190 ade 2986172..2987893 (+) 1722 WP_065644161.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=91480 L6430_RS15175 WP_020451235.1 2983526..2983813(+) (abrB) [Bacillus paralicheniformis strain J41TS8]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=91480 L6430_RS15175 WP_020451235.1 2983526..2983813(+) (abrB) [Bacillus paralicheniformis strain J41TS8]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGAATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCTGAA
TTGCTTTTGGAAGAAATTAAAGCCGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment