Detailed information NTG0914796

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: ABXR87_RS15580
• Genome accession: NZ_CP159763
• Coordinates: 3278562..3280010 (-)
• Length: 482 a.a.
• NCBI ID: WP_002067743.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain AB11-AUFP
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3273562..3285010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXR87_RS15555 (ABXR87_15555)	hisD	3274323..3275612 (-)	1290	WP_001253725.1	histidinol dehydrogenase	-
ABXR87_RS15560 (ABXR87_15560)	hisG	3275718..3276401 (-)	684	WP_025468037.1	ATP phosphoribosyltransferase	-
ABXR87_RS15565 (ABXR87_15565)	murA	3276401..3277657 (-)	1257	WP_000357156.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABXR87_RS15570 (ABXR87_15570)	ibaG	3277664..3277915 (-)	252	WP_001083680.1	BolA family iron metabolism protein IbaG	-
ABXR87_RS15575 (ABXR87_15575)	raiA	3278054..3278392 (-)	339	WP_001167461.1	ribosome-associated translation inhibitor RaiA	-
ABXR87_RS15580 (ABXR87_15580)	rpoN/rpoN1	3278562..3280010 (-)	1449	WP_002067743.1	RNA polymerase factor sigma-54	Machinery gene

Sequence

Protein

• Length: 482 a.a.
• Molecular weight: 55086.97 Da
• Isoelectric Point: 4.6642

>NTDB_id=914796 ABXR87_RS15580 WP_002067743.1 3278562..3280010(-) (rpoN/rpoN1) [Acinetobacter baumannii strain AB11-AUFP]
MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKVEDESLAESLSTLEHKETDDLTTELNADHLP
DDLPVDTEWDDIYTHQSTALGTPEFEEREDNRQVHLTLKEHILEQVNLLHFSKVDQLIAYCIVDALDDKGFLDAELEEII
LAVQHLLSEMDMEEEVEEDEVVVVLKHIQRLDPIGIGARNLAECLKVQLEFLPRETEYLKEARSLLQYYELLIANDLNKL
LKQTGLSKEQLKFAVDLLKTLKPYPGMDFEKQESEYQIPDVVVAKKDLHWQVQLNPDVMPKLRINSFYSSMIRRADQSDD
NLYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQKAFLEIGPEAMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRG
LFELKYFFSSHVGTTTGGEASSTAIRAMIKKLVSNENPRKPLSDNAIAALLKEEGIEVARRTVAKYRESLHIPSSSERKV
LI

Nucleotide

• Length: 1449 bp

>NTDB_id=914796 ABXR87_RS15580 WP_002067743.1 3278562..3280010(-) (rpoN/rpoN1) [Acinetobacter baumannii strain AB11-AUFP]
ATGAAATTATCTGTTGGATTGAAAGTTGCGAATTCATTATCGTTAACGCCTCAATTGCAGCAGGCAATCCGTTTACTACA
ACTTTCTAGCCTAGAGTTAGAGCAAGAAATCCAAATTCAATTAGATAGTAATCCATTACTTGAAAAAGTAGAAGATGAAT
CACTAGCGGAAAGTTTATCTACTTTAGAACATAAAGAAACTGATGATCTTACAACAGAGTTGAATGCTGATCACTTACCT
GATGACCTGCCTGTTGATACTGAATGGGATGATATTTATACACATCAATCCACTGCTTTGGGTACTCCTGAGTTCGAAGA
GCGTGAAGATAATCGTCAAGTTCACCTAACGCTTAAAGAACATATTTTGGAGCAAGTGAACTTACTGCATTTTTCAAAAG
TAGATCAGTTGATTGCTTATTGCATAGTTGATGCTTTAGATGATAAAGGTTTTCTGGATGCTGAATTAGAAGAGATTATT
TTGGCAGTACAGCATTTATTAAGTGAGATGGATATGGAAGAGGAAGTGGAGGAGGATGAAGTTGTAGTAGTTTTAAAACA
TATTCAACGTCTTGATCCAATTGGAATCGGAGCTCGTAATTTAGCTGAATGTTTAAAAGTTCAGTTGGAGTTCTTGCCTC
GAGAAACTGAATATTTGAAAGAAGCCAGAAGTCTACTTCAATATTACGAATTACTGATTGCGAATGATCTTAATAAATTA
TTGAAGCAAACAGGGCTTTCCAAAGAACAATTAAAATTTGCAGTTGATTTATTAAAAACATTAAAGCCTTATCCAGGCAT
GGACTTTGAAAAGCAAGAATCAGAATATCAAATTCCTGACGTAGTCGTTGCCAAGAAGGACTTGCATTGGCAAGTTCAGT
TAAATCCTGATGTGATGCCAAAATTAAGAATCAATTCTTTTTATTCGAGTATGATTCGTAGAGCAGATCAAAGTGATGAT
AATTTATATCTACGTAATCAAATGCTTGAGGCTAAAAATTTTATAAAAAGTATTGATGAACGCCACAAAACATTATTAAA
AGTTGCGACTTGTATTGTTGAGCATCAAAAAGCATTTCTTGAAATAGGTCCCGAAGCAATGAAACCCTTAGTACTAAGGG
ATGTTGCAGAAGAAGTAGAATTACATGAGTCGACCGTTTCTCGCGTTACAACAAATAAGTATATGCTTACTCCACGTGGA
CTTTTTGAGTTGAAATACTTCTTTTCTAGTCATGTGGGGACAACCACAGGAGGTGAGGCTTCTTCTACCGCAATTCGGGC
GATGATTAAAAAGTTAGTTTCTAATGAAAATCCGCGTAAACCTTTGTCTGATAATGCAATTGCTGCTTTATTGAAAGAGG
AGGGAATAGAAGTAGCTAGAAGGACTGTAGCAAAATATAGAGAATCGTTACATATTCCATCGTCATCCGAGAGAAAAGTC
TTGATCTAA

Domains

Predicted by InterProScan.

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (7-48)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (111-308)

• Sigma-54, DNA binding domain (Sigma54_DBD) (323-479)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	43.529	100	0.461