Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABXR87_RS09775 Genome accession   NZ_CP159763
Coordinates   2077813..2078448 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain AB11-AUFP     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2072813..2083448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR87_RS09750 (ABXR87_09750) - 2072869..2073849 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABXR87_RS09755 (ABXR87_09755) kdsB 2073861..2074622 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABXR87_RS09760 (ABXR87_09760) lpxK 2074632..2075642 (-) 1011 WP_002068489.1 tetraacyldisaccharide 4'-kinase -
  ABXR87_RS09765 (ABXR87_09765) msbA 2075645..2077372 (-) 1728 WP_002068390.1 lipid A export permease/ATP-binding protein MsbA -
  ABXR87_RS09770 (ABXR87_09770) - 2077369..2077797 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  ABXR87_RS09775 (ABXR87_09775) exbB 2077813..2078448 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABXR87_RS09780 (ABXR87_09780) - 2078498..2079385 (-) 888 WP_002068411.1 ParB/RepB/Spo0J family partition protein -
  ABXR87_RS09785 (ABXR87_09785) - 2079382..2080164 (-) 783 WP_000057212.1 ParA family protein -
  ABXR87_RS09790 (ABXR87_09790) rsmG 2080186..2080818 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABXR87_RS09795 (ABXR87_09795) murU 2080906..2081595 (-) 690 WP_000646463.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABXR87_RS09800 (ABXR87_09800) - 2081595..2082608 (-) 1014 WP_001097115.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=914784 ABXR87_RS09775 WP_000264037.1 2077813..2078448(-) (exbB) [Acinetobacter baumannii strain AB11-AUFP]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=914784 ABXR87_RS09775 WP_000264037.1 2077813..2078448(-) (exbB) [Acinetobacter baumannii strain AB11-AUFP]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGACACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393