Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SC851_RS07850 Genome accession   NZ_CP140606
Coordinates   1581111..1582919 (-) Length   602 a.a.
NCBI ID   WP_257577028.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain XYW20210915003     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576111..1587919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC851_RS07825 (SC851_07785) mgtE 1576490..1577857 (-) 1368 WP_004048221.1 magnesium transporter -
  SC851_RS07830 (SC851_07790) - 1577873..1578769 (-) 897 WP_405257292.1 RluA family pseudouridine synthase -
  SC851_RS07835 (SC851_07795) - 1578747..1579565 (-) 819 WP_004048223.1 NAD kinase -
  SC851_RS07840 (SC851_07800) - 1579602..1580231 (-) 630 WP_153550846.1 GTP pyrophosphokinase family protein -
  SC851_RS07845 (SC851_07805) - 1580436..1581065 (+) 630 WP_004048225.1 DsbA family protein -
  SC851_RS07850 (SC851_07810) pepF 1581111..1582919 (-) 1809 WP_257577028.1 oligoendopeptidase F Regulator
  SC851_RS07855 (SC851_07815) - 1582958..1583932 (-) 975 WP_135942334.1 competence protein CoiA -
  SC851_RS07860 (SC851_07820) - 1584024..1584773 (-) 750 WP_004048228.1 adaptor protein MecA -
  SC851_RS07865 (SC851_07825) spxA 1584908..1585306 (-) 399 WP_004048229.1 transcriptional regulator SpxA -
  SC851_RS07870 (SC851_07830) nrdG 1585663..1586340 (-) 678 WP_163587557.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68393.15 Da        Isoelectric Point: 4.7640

>NTDB_id=914770 SC851_RS07850 WP_257577028.1 1581111..1582919(-) (pepF) [Ligilactobacillus murinus strain XYW20210915003]
MSEVTRLPKRSEVPLELTWDLTKIFATDAEFEEAFGQVVKAAEDFEQYKGTLENGAQAFLVALMAMLKLDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFQPELLALAPEKLASYYQAEPRLNAYKTLVNDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDGSGSKVELSNGVYGKLLEATERPVRREAFEQLYTVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNNIPVAVYDTLVKTVNENLELLHDYVALRKDILGVDELHMYDMYTPLTGEPTLTFT
YEQAKKMTLEALSVLGEEYTTYVEKAFAERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTADLMSDFYSKLNQRYYGDAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLNYLKAG
SSAAPLEVMKKAGVDMTDSQYLEKAFGIFKERLAELKELLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=914770 SC851_RS07850 WP_257577028.1 1581111..1582919(-) (pepF) [Ligilactobacillus murinus strain XYW20210915003]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTGCCACTCGAGCTTACTTGGGATCTGACTAAGATCTTTGCGAC
TGATGCAGAATTTGAAGAAGCATTTGGGCAAGTTGTTAAAGCAGCTGAAGATTTTGAACAATACAAAGGAACATTAGAAA
ATGGGGCTCAAGCCTTTTTAGTTGCTCTAATGGCAATGCTTAAATTGGATCGTCAACTTGAAGTAGTTTATGTCTATGCA
AGCATGAAAAATGATGAGGATACTGCTAATGCTAAGTATCAAGCTTTAATGGCACGGGTCCAAAAGTTATTGGCTGATGT
TTCAGCTAAATTAGCTTGGTTTCAGCCTGAATTATTAGCTTTAGCACCAGAAAAATTAGCAAGCTATTATCAAGCTGAGC
CTAGATTGAACGCCTATAAAACATTAGTCAATGATTGGACTCGACTTCGCGCCCATGTCTTGAGTGAAAAAGAAGAAGCG
CTATTAGCAGGTGCAAGCGACATCTTAGGCGCTTCGGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTTCC
CGTAGTAACTGATGGATCGGGTTCAAAAGTCGAGCTTTCAAATGGAGTCTACGGTAAATTGCTCGAAGCGACCGAGCGCC
CAGTTAGACGTGAAGCATTCGAACAGTTATACACTGTATATAAGCAGTTCAGACATACGTTTGCGGCTACCCTGTCTGCA
CATGTACGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCACTAGCCCAAAATAATAT
TCCAGTAGCTGTTTATGATACTTTAGTTAAAACAGTCAATGAAAATTTGGAGCTACTGCATGATTATGTAGCTTTACGTA
AGGATATCTTAGGTGTCGATGAGTTGCATATGTATGATATGTATACTCCCTTGACGGGTGAACCGACATTGACGTTTACT
TATGAGCAGGCTAAAAAGATGACCTTAGAGGCTTTGAGCGTCTTAGGCGAAGAATATACTACCTATGTAGAGAAGGCTTT
TGCTGAACGGTGGATCGATGTTGTTGCTAATGCAGGTAAGCGTTCGGGGGCCTATTCGGGTGGGGCCTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGCTAGATAATCTTTTTACATTAGTCCATGAGATGGGACACACGATGCACAGC
TACTATACACGGACTAATCAACCTTATCAATATGGGGATTATTCGATCTTTGTTGCTGAGATTGCATCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGCTAGAGACCCAGACTGATCCTAAGGTACGGGCTTACGTATTGAATCACTATTTAGATG
GCTTTAAGGGAACCGTTTATCGGCAAACACAATTTGCTGAATTTGAAGCTTGGATCCATGAGCAAGATGCGTCACAAGTG
CCATTAACAGCAGATCTGATGTCAGATTTTTACAGTAAATTAAATCAACGCTACTATGGTGATGCAGTTGAAAATGACCC
AGAGATCGCATATGAATGGTCACGGATCCCGCATTTCTACTATAATTTCTATGTCTATCAATATGCAACTGGTTTTGGTG
CGGCCTCTACTTTAGCAGAGCGCGTCTTAGATGAAGAGCCTGCGCACACTGAAGCTTATTTGAACTACTTAAAAGCAGGT
AGTTCAGCGGCTCCATTAGAAGTAATGAAAAAAGCTGGTGTCGATATGACTGATAGTCAATATTTAGAGAAAGCTTTTGG
GATCTTTAAGGAACGTTTGGCTGAATTAAAAGAGCTATTAGCTAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.626

98.505

0.528