Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RI032_RS13660 Genome accession   NZ_CP140571
Coordinates   2978829..2979230 (+) Length   133 a.a.
NCBI ID   WP_005418455.1    Uniprot ID   -
Organism   Stenotrophomonas geniculata strain FLMAT1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973829..2984230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI032_RS13645 tsaB 2975555..2976268 (+) 714 WP_049452717.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  RI032_RS13650 - 2976757..2977641 (-) 885 WP_010482701.1 energy transducer TonB -
  RI032_RS13655 gshB 2977641..2978588 (-) 948 WP_019338700.1 glutathione synthase -
  RI032_RS13660 pilG 2978829..2979230 (+) 402 WP_005418455.1 twitching motility response regulator PilG Regulator
  RI032_RS13665 - 2979249..2979611 (+) 363 WP_005410717.1 response regulator -
  RI032_RS13670 - 2979611..2980141 (+) 531 WP_010482705.1 chemotaxis protein CheW -
  RI032_RS13675 - 2980183..2982219 (+) 2037 WP_010482706.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14657.98 Da        Isoelectric Point: 6.3483

>NTDB_id=914749 RI032_RS13660 WP_005418455.1 2978829..2979230(+) (pilG) [Stenotrophomonas geniculata strain FLMAT1]
MTENTTAGGELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKATPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLGAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=914749 RI032_RS13660 WP_005418455.1 2978829..2979230(+) (pilG) [Stenotrophomonas geniculata strain FLMAT1]
ATGACTGAAAACACGACTGCGGGCGGGGAACTCGCAGGACTCCGGGTGATGGTCATCGATGATTCGAAGACCATCCGCAG
GACTGCGGAAACGCTGCTCAAGCGCGAAGGCTGCGAGGTGGTCACCGCCACCGACGGCTTCGAAGCGCTTGCGAAGATCG
CAGACCAGCAACCGCAGATCATCTTCGTCGACATCATGATGCCGCGCCTGGACGGGTACCAGACCTGTGCGCTGATCAAG
GGCAACCAGCTGTTCAAGGCGACCCCGGTCATCATGCTCTCGTCCAAGGATGGCCTGTTCGACAAGGCGCGGGGACGCAT
CGTCGGCTCGGAGCAATACCTGACGAAGCCTTTCACGCGTGAAGAACTGCTGGGTGCCATCCGCACATACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677