Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   ABXR87_RS00920 Genome accession   NZ_CP159763
Coordinates   207259..210093 (-) Length   944 a.a.
NCBI ID   WP_000083354.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB11-AUFP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 202259..215093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR87_RS00910 (ABXR87_00910) omp33-36 203627..204526 (-) 900 WP_000733005.1 porin Omp33-36 -
  ABXR87_RS00915 (ABXR87_00915) - 205519..207225 (+) 1707 WP_002068700.1 GGDEF domain-containing protein -
  ABXR87_RS00920 (ABXR87_00920) uvrA 207259..210093 (-) 2835 WP_000083354.1 excinuclease ABC subunit UvrA Machinery gene
  ABXR87_RS00925 (ABXR87_00925) - 210390..210992 (+) 603 WP_000826320.1 TetR/AcrR family transcriptional regulator -
  ABXR87_RS00930 (ABXR87_00930) - 210996..211973 (+) 978 WP_001256570.1 zinc-binding dehydrogenase -
  ABXR87_RS00935 (ABXR87_00935) - 212039..212392 (+) 354 WP_000580166.1 DUF1304 domain-containing protein -
  ABXR87_RS00940 (ABXR87_00940) - 212445..212786 (+) 342 WP_000263327.1 GlpM family protein -
  ABXR87_RS00945 (ABXR87_00945) tenA 212837..213511 (-) 675 WP_000899418.1 thiaminase II -
  ABXR87_RS00950 (ABXR87_00950) - 213774..214856 (+) 1083 WP_000680211.1 DUF475 domain-containing protein -

Sequence


Protein


Download         Length: 944 a.a.        Molecular weight: 104395.66 Da        Isoelectric Point: 6.5116

>NTDB_id=914742 ABXR87_RS00920 WP_000083354.1 207259..210093(-) (uvrA) [Acinetobacter baumannii strain AB11-AUFP]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDDLAKHADSLTGQYLSGKLKIEVPKKRTQSPRPDEFIKLSGAAGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLKQ

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=914742 ABXR87_RS00920 WP_000083354.1 207259..210093(-) (uvrA) [Acinetobacter baumannii strain AB11-AUFP]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGTACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTAATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTATGCCGAAGGACAGCGCC
GTTATGTCGAATCACTTTCGGCATATGCCCGTCAGTTTTTATCGCAAATGGAAAAACCTGAAGTTGACTCGATTGAAGGT
TTATCACCAGCCATTGCCATTGAGCAAAAGTCTACCAGTCATAACCCACGTTCAACCGTTGGTACGATTACCGAAATTTA
TGACTATTTACGTCTGCTTTATGCACGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCGGTAAAGAACCTTGAGGAAGGTACAGCACTTATGTTGCTTGCCCCTGTTGTTCGTGAGCGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTTGTTCGTGCGCGTGTTGATGGTGAAATCATTGA
TATTGATACACCACCAGAACTCGACAAAAAGAAAAAACATACCATTGAAGTCGTTGTTGACCGCTTTAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAAACTGCACTGCGTTTAGGTGGCGATATTGCAGTTTTATCGTGGATGAAT
GGCGAACACCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGCGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAATAACCCGTTCGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTTAGCCCTGAAA
AACTCATTCCTAACCCTGAGCTTGCAATTAGTGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTTGGTTTTCAACTTGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
ATTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGTGGCCGTAAACATACACGCGTGCAAC
CGTTTGAAGGAATTTTGCCACACCTTGAGCGTCGCTATCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCACAA
TATTTATCTAACGCAGCGTGTGATGCATGTGGTGGTTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTAAAAGATAA
AACCATTGCCGACATTACCCGCATGTCGATTGGAGATGCTGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTACATTTCTTGGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGTTCTGCCGAAACACTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTCATGTACGTCCTTGATGAACCATCAATTGGTCTCCATCAACGTGATAATGACCGTTTATTACAAACGCTAATTC
GCTTACGTGACTTAGGTAATACGGTATTAGTCGTTGAACATGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCTGGTGCTGGCGTGCATGGTGGCGTTGTCATTGCTGAAGGTACGTATGATGATCTGGCTAAACATGCTGATTC
TCTTACAGGACAATACCTTTCTGGCAAACTCAAAATTGAAGTGCCAAAAAAACGTACTCAATCACCAAGACCAGATGAAT
TTATCAAACTTTCAGGTGCAGCGGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGACTTGTGTC
ACGGGTGTTTCAGGTTCAGGTAAATCAACACTGATTAACCGTACGTTACTCCCACTGGCTGCAACACAGCTCAACGGTGC
AACGACTTTAACAGCTGAAAAATTTGACTCGATTGATGGTCTACAACATCTGGATAAAGTCGTTGATATTGACCAAAGCC
CAATTGGCCGTACACCGCGCTCTAATCCAGCGACTTATACGGGTCTATTTACGCCAATTCGTGAATTATTTGCTCAAACA
CCAGAAGCGAAAGCGCGTGGTTATAGTGCGGGTCGTTTCTCGTTTAACGTAAAAGGCGGACGCTGCGAAGCGTGTGAAGG
CGACGGTATGATTAAAGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCATGTCATGGCAAACGTTATA
ACCGTGAAACACTTGAAGTCGGTTATAAAGGCAAAAATATTTCTGATGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTCTTTAGTGCTATTCCAGTTATTCACCGTCGTTTAGAAACCTTAACTCAGGTAGGTCTAGGCTATATTCGTTTAGGTCA
GGCGGCTACTACTTTATCTGGTGGTGAAGCACAGCGTGTCAAACTGGCTCGTGAGTTAGCGAAACGTGATACGGGTAAAA
CGCTTTATATCTTGGATGAACCAACAACAGGTCTGCATTTCCATGATATTGCCAAGTTACTCGATATTTTGCATGAGCTA
CGCAACAAAGGTAATACCATTGTGGTAATTGAACATAACCTTGATGTCATTAAAACAGCAGACTGGGTGGTCGACTTAGG
CCCTGAAGGTGGTTCGGGCGGTGGTATGATCATTGCCGAAGGAACACCTGAACAAGTAGCCGAGGTTGAGATTTCCCATA
CTGGTCGCTTCTTGAAACCGATGTTGAAACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.356

100

0.564

  uvrA Streptococcus pneumoniae TIGR4

56.356

100

0.564

  uvrA Streptococcus pneumoniae D39

56.356

100

0.564