Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   U4X11_RS27825 Genome accession   NZ_CP140515
Coordinates   5887889..5888446 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 2023CK-01480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5882889..5893446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4X11_RS27805 (U4X11_27775) pilR 5884165..5885502 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  U4X11_RS27810 (U4X11_27780) thiO 5885548..5886642 (-) 1095 WP_023096126.1 glycine oxidase ThiO -
  U4X11_RS27815 (U4X11_27785) - 5886777..5887286 (+) 510 WP_009316266.1 Tfp pilus assembly protein FimT/FimU -
  U4X11_RS27820 (U4X11_27790) - 5887392..5887898 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  U4X11_RS27825 (U4X11_27795) pilV 5887889..5888446 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  U4X11_RS27830 (U4X11_27800) pilW 5888443..5889267 (+) 825 WP_023096127.1 type 4a pilus minor pilin PilW -
  U4X11_RS27835 (U4X11_27805) pilX 5889264..5889851 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  U4X11_RS27840 (U4X11_27810) pilY1 5889863..5893354 (+) 3492 WP_023096128.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=914663 U4X11_RS27825 WP_003094697.1 5887889..5888446(+) (pilV) [Pseudomonas aeruginosa strain 2023CK-01480]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=914663 U4X11_RS27825 WP_003094697.1 5887889..5888446(+) (pilV) [Pseudomonas aeruginosa strain 2023CK-01480]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCAGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978