Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   L6430_RS12890 Genome accession   NZ_AP025342
Coordinates   2544533..2545111 (+) Length   192 a.a.
NCBI ID   WP_096747985.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2539533..2550111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS23115 - 2540031..2540537 (-) 507 WP_374706265.1 methyl-accepting chemotaxis protein -
  L6430_RS23120 - 2540838..2541209 (-) 372 Protein_2490 protoglobin family protein -
  L6430_RS12875 - 2541430..2542980 (-) 1551 WP_043054265.1 FAD-dependent oxidoreductase -
  L6430_RS12880 - 2543101..2543958 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  L6430_RS12885 - 2544027..2544260 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  L6430_RS12890 comK 2544533..2545111 (+) 579 WP_096747985.1 competence protein ComK Regulator
  L6430_RS12895 - 2545105..2545470 (-) 366 WP_105980857.1 hypothetical protein -
  L6430_RS12900 - 2545678..2546289 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  L6430_RS12905 lepB 2546302..2546820 (+) 519 WP_020450832.1 signal peptidase I -
  L6430_RS12910 - 2546949..2548724 (-) 1776 WP_025811741.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22390.61 Da        Isoelectric Point: 8.6274

>NTDB_id=91466 L6430_RS12890 WP_096747985.1 2544533..2545111(+) (comK) [Bacillus paralicheniformis strain J41TS8]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILEADRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=91466 L6430_RS12890 WP_096747985.1 2544533..2545111(+) (comK) [Bacillus paralicheniformis strain J41TS8]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGGCTGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment