Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABXJ32_RS08755 Genome accession   NZ_CP159728
Coordinates   1727540..1728169 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z22-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722540..1733169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ32_RS08740 (ABXJ32_08740) helD 1722782..1724836 (-) 2055 WP_047675448.1 DNA helicase IV -
  ABXJ32_RS08745 (ABXJ32_08745) yccF 1724959..1725405 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABXJ32_RS08750 (ABXJ32_08750) yccS 1725415..1727577 (+) 2163 WP_000875046.1 YccS family putative transporter -
  ABXJ32_RS08755 (ABXJ32_08755) sxy/tfoX 1727540..1728169 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABXJ32_RS08760 (ABXJ32_08760) sulA 1728388..1728897 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABXJ32_RS08765 (ABXJ32_08765) ompA 1729254..1730294 (+) 1041 WP_000750416.1 porin OmpA -
  ABXJ32_RS08770 (ABXJ32_08770) matP 1730370..1730822 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABXJ32_RS08775 (ABXJ32_08775) ycbZ 1731008..1732768 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=914596 ABXJ32_RS08755 WP_000839153.1 1727540..1728169(-) (sxy/tfoX) [Escherichia coli strain Z22-6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=914596 ABXJ32_RS08755 WP_000839153.1 1727540..1728169(-) (sxy/tfoX) [Escherichia coli strain Z22-6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1