Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L6430_RS08960 Genome accession   NZ_AP025342
Coordinates   1784722..1785675 (+) Length   317 a.a.
NCBI ID   WP_026580546.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779722..1790675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS08945 - 1779770..1781197 (+) 1428 WP_020450167.1 sensor histidine kinase -
  L6430_RS23065 - 1781229..1782182 (-) 954 WP_373367326.1 methyl-accepting chemotaxis protein -
  L6430_RS23070 - 1782231..1782947 (-) 717 Protein_1732 MCP four helix bundle domain-containing protein -
  L6430_RS08955 - 1783083..1784444 (-) 1362 WP_025810139.1 aspartate kinase -
  L6430_RS08960 ceuB 1784722..1785675 (+) 954 WP_026580546.1 ABC transporter permease Machinery gene
  L6430_RS08965 - 1785665..1786609 (+) 945 WP_059231855.1 iron chelate uptake ABC transporter family permease subunit -
  L6430_RS08970 - 1786609..1787367 (+) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  L6430_RS08975 - 1787382..1788329 (+) 948 WP_035337207.1 siderophore ABC transporter substrate-binding protein -
  L6430_RS08980 - 1788511..1789932 (-) 1422 WP_026580547.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=91459 L6430_RS08960 WP_026580546.1 1784722..1785675(+) (ceuB) [Bacillus paralicheniformis strain J41TS8]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=91459 L6430_RS08960 WP_026580546.1 1784722..1785675(+) (ceuB) [Bacillus paralicheniformis strain J41TS8]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTAACGCGTAATAAATTTGTTTCACCGACCACCGCT
GGTACGATGGATTGGGCGAGGCTCGGTGTAATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTTGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGTTTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment