Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U4W14_RS08305 Genome accession   NZ_CP140498
Coordinates   1764774..1765400 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain 2023CK-01311     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759774..1770400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4W14_RS08285 (U4W14_08255) - 1760173..1761933 (-) 1761 WP_368744992.1 AAA family ATPase -
  U4W14_RS08290 (U4W14_08260) matP 1762120..1762572 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  U4W14_RS08295 (U4W14_08265) ompA 1762638..1763690 (-) 1053 WP_017694761.1 porin OmpA -
  U4W14_RS08300 (U4W14_08270) sulA 1764047..1764556 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  U4W14_RS08305 (U4W14_08275) sxy/tfoX 1764774..1765400 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  U4W14_RS08310 (U4W14_08280) yccS 1765357..1767519 (-) 2163 WP_015570895.1 YccS family putative transporter -
  U4W14_RS08315 (U4W14_08285) - 1767538..1767984 (-) 447 WP_003858149.1 YccF domain-containing protein -
  U4W14_RS08320 (U4W14_08290) helD 1768107..1770161 (+) 2055 WP_045338784.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=914551 U4W14_RS08305 WP_017384804.1 1764774..1765400(+) (sxy/tfoX) [Enterobacter hormaechei strain 2023CK-01311]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=914551 U4W14_RS08305 WP_017384804.1 1764774..1765400(+) (sxy/tfoX) [Enterobacter hormaechei strain 2023CK-01311]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGTGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572