Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6430_RS06735 Genome accession   NZ_AP025342
Coordinates   1338002..1338292 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333002..1343292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS06695 - 1333025..1333354 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  L6430_RS06700 - 1333366..1333806 (+) 441 WP_020449792.1 YaaR family protein -
  L6430_RS06705 holB 1333818..1334807 (+) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  L6430_RS06710 - 1334810..1335637 (+) 828 WP_020449794.1 PSP1 domain-containing protein -
  L6430_RS06715 yabA 1335652..1336014 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  L6430_RS06720 - 1336079..1336822 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  L6430_RS06725 - 1336809..1337102 (+) 294 WP_020449797.1 GIY-YIG nuclease family protein -
  L6430_RS06730 rsmI 1337077..1337952 (+) 876 WP_065644010.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  L6430_RS06735 abrB 1338002..1338292 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6430_RS06740 metG 1338800..1340788 (+) 1989 WP_035337513.1 methionine--tRNA ligase -
  L6430_RS06745 - 1340872..1341639 (+) 768 WP_020449800.1 TatD family hydrolase -
  L6430_RS06750 - 1341884..1343080 (+) 1197 WP_020449801.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=91453 L6430_RS06735 WP_085959887.1 1338002..1338292(-) (abrB) [Bacillus paralicheniformis strain J41TS8]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=91453 L6430_RS06735 WP_085959887.1 1338002..1338292(-) (abrB) [Bacillus paralicheniformis strain J41TS8]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGT
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment