Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   L6430_RS06490 Genome accession   NZ_AP025342
Coordinates   1292334..1293446 (+) Length   370 a.a.
NCBI ID   WP_025810489.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287334..1298446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS06465 rnpA 1288061..1288420 (-) 360 WP_020453656.1 ribonuclease P protein component -
  L6430_RS06470 rpmH 1288505..1288639 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  L6430_RS06475 dnaA 1289281..1290621 (+) 1341 WP_023856797.1 chromosomal replication initiator protein DnaA -
  L6430_RS06480 dnaN 1290799..1291935 (+) 1137 WP_065643453.1 DNA polymerase III subunit beta -
  L6430_RS06485 yaaA 1292102..1292317 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  L6430_RS06490 recF 1292334..1293446 (+) 1113 WP_025810489.1 DNA replication/repair protein RecF Machinery gene
  L6430_RS06495 remB 1293464..1293706 (+) 243 WP_023856795.1 extracellular matrix regulator RemB -
  L6430_RS06500 gyrB 1293767..1295680 (+) 1914 WP_031305110.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  L6430_RS06505 gyrA 1295872..1298340 (+) 2469 WP_023856793.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42542.43 Da        Isoelectric Point: 6.7331

>NTDB_id=91451 L6430_RS06490 WP_025810489.1 1292334..1293446(+) (recF) [Bacillus paralicheniformis strain J41TS8]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGF
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91451 L6430_RS06490 WP_025810489.1 1292334..1293446(+) (recF) [Bacillus paralicheniformis strain J41TS8]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAAAACAAAGTGAATGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTTT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTCAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGACCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCTTTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATATCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886

Multiple sequence alignment