Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U4W25_RS09555 Genome accession   NZ_CP140489
Coordinates   1972600..1973229 (+) Length   209 a.a.
NCBI ID   WP_043001157.1    Uniprot ID   A0A3S7DAA7
Organism   Citrobacter amalonaticus strain 2023CK-01304     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1967600..1978229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4W25_RS09535 (U4W25_09525) - 1967988..1969748 (-) 1761 WP_043001160.1 Lon protease family protein -
  U4W25_RS09540 (U4W25_09530) matP 1969934..1970386 (+) 453 WP_043001159.1 macrodomain Ter protein MatP -
  U4W25_RS09545 (U4W25_09535) ompA 1970462..1971517 (-) 1056 WP_043001975.1 porin OmpA -
  U4W25_RS09550 (U4W25_09540) sulA 1971873..1972382 (-) 510 WP_043001158.1 SOS-induced cell division inhibitor SulA -
  U4W25_RS09555 (U4W25_09545) sxy/tfoX 1972600..1973229 (+) 630 WP_043001157.1 TfoX/Sxy family DNA transformation protein Regulator
  U4W25_RS09560 (U4W25_09550) yccS 1973183..1975345 (-) 2163 WP_043001156.1 YccS family putative transporter -
  U4W25_RS09565 (U4W25_09555) - 1975352..1975810 (-) 459 WP_043001155.1 YccF domain-containing protein -
  U4W25_RS09570 (U4W25_09560) helD 1975934..1977988 (+) 2055 WP_043001154.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24229.11 Da        Isoelectric Point: 9.4514

>NTDB_id=914507 U4W25_RS09555 WP_043001157.1 1972600..1973229(+) (sxy/tfoX) [Citrobacter amalonaticus strain 2023CK-01304]
MKIHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIRNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDTLWRDQQQLIQLSKFSLDAALQEKLSRSSQQRLKDLPNMTFHLESLLNEAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPVPMSVEKSE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=914507 U4W25_RS09555 WP_043001157.1 1972600..1973229(+) (sxy/tfoX) [Citrobacter amalonaticus strain 2023CK-01304]
ATGAAAATTCACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCACTTCCGCTCACT
GTTTGGCAGTTACAGTCTGACAATCAGGAATACCGTCTTTGCGATGGTTGCCAATGGGGAGCTCTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGCGTGCAACATTCCCCGGTCTGGCTGACGTTTCTTAAACGCGGGCGTCCGGTCATGCTTAAT
TATTATCAGGTTGATGACACTCTTTGGCGCGACCAGCAACAGTTGATCCAGTTGTCGAAGTTTTCGCTGGATGCCGCGTT
GCAGGAGAAGTTGTCCCGCAGTTCTCAGCAGCGGCTTAAGGATCTCCCCAATATGACCTTTCATCTGGAGAGTTTGCTGA
ATGAAGCGGGGATCTACGACGTCGCCACCCTGCGAATGCTGGGCGCTAAAATGTGCTGGTTGCGACTGCGACAAATGAAC
AAATCCATCACTGACAAGGTGCTGTTTAATCTTGAAGGGGCTATTTATGGTATCCATGAAGCGGCGCTCCCGGCGATACG
CCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCACCGGTGCCGATGTCGGTGGAGAAGAGTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S7DAA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.5

95.694

0.675