Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   U4V76_RS07250 Genome accession   NZ_CP140485
Coordinates   1417098..1417685 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain PNUSAC038549     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412098..1422685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4V76_RS07230 (U4V76_07255) - 1412846..1413610 (+) 765 WP_002894096.1 TIGR02757 family protein -
  U4V76_RS07235 (U4V76_07260) - 1413614..1414378 (+) 765 WP_002855821.1 TSUP family transporter -
  U4V76_RS07240 (U4V76_07265) ctsF 1414371..1415552 (-) 1182 WP_002894094.1 type II secretion system F family protein Machinery gene
  U4V76_RS07245 (U4V76_07270) ctsE 1415549..1417108 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  U4V76_RS07250 (U4V76_07275) ctsX 1417098..1417685 (-) 588 WP_002851370.1 membrane protein Machinery gene
  U4V76_RS07255 (U4V76_07280) ctsP 1417689..1418297 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  U4V76_RS07260 (U4V76_07285) ctsD 1418290..1419702 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  U4V76_RS07265 (U4V76_07290) ctsR 1419680..1419991 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=914496 U4V76_RS07250 WP_002851370.1 1417098..1417685(-) (ctsX) [Campylobacter jejuni strain PNUSAC038549]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=914496 U4V76_RS07250 WP_002851370.1 1417098..1417685(-) (ctsX) [Campylobacter jejuni strain PNUSAC038549]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1