Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   U4V76_RS05685 Genome accession   NZ_CP140485
Coordinates   1093125..1094078 (+) Length   317 a.a.
NCBI ID   WP_052853944.1    Uniprot ID   A0A1J6QE79
Organism   Campylobacter jejuni strain PNUSAC038549     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088125..1099078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4V76_RS05655 (U4V76_05680) neuC 1088701..1089825 (+) 1125 WP_052853946.1 UDP-N-acetylglucosamine 2-epimerase -
  U4V76_RS05660 (U4V76_05685) - 1089818..1090435 (+) 618 WP_016818193.1 glycosyltransferase -
  U4V76_RS05665 (U4V76_05690) - 1090432..1090764 (+) 333 WP_019260376.1 hypothetical protein -
  U4V76_RS05670 (U4V76_05695) - 1090761..1091426 (+) 666 WP_002869017.1 cytidylyltransferase domain-containing protein -
  U4V76_RS05675 (U4V76_05700) - 1091414..1092247 (+) 834 WP_322631826.1 CatB-related O-acetyltransferase -
  U4V76_RS05680 (U4V76_05705) - 1092239..1093066 (-) 828 WP_002869015.1 glycosyltransferase family 2 protein -
  U4V76_RS05685 (U4V76_05710) waaF 1093125..1094078 (+) 954 WP_052853944.1 glycosyltransferase family 9 protein Regulator
  U4V76_RS05690 (U4V76_05715) - 1094085..1094840 (-) 756 WP_002869013.1 glycosyltransferase family 25 protein -
  U4V76_RS05695 (U4V76_05720) gmhA 1094840..1095400 (-) 561 WP_002869012.1 D-sedoheptulose 7-phosphate isomerase -
  U4V76_RS05700 (U4V76_05725) rfaE1 1095397..1096782 (-) 1386 WP_322631827.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  U4V76_RS05705 (U4V76_05730) rfaD 1096775..1097728 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  U4V76_RS05710 (U4V76_05735) gmhB 1097729..1098289 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  U4V76_RS05715 (U4V76_05740) - 1098371..1098673 (+) 303 WP_002852762.1 cytochrome c -
  U4V76_RS05720 (U4V76_05745) ccoS 1098696..1098902 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36556.21 Da        Isoelectric Point: 10.3630

>NTDB_id=914486 U4V76_RS05685 WP_052853944.1 1093125..1094078(+) (waaF) [Campylobacter jejuni strain PNUSAC038549]
MKIFIHLPTWLGDAVMASPALYAIKKHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=914486 U4V76_RS05685 WP_052853944.1 1093125..1094078(+) (waaF) [Campylobacter jejuni strain PNUSAC038549]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAAAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6QE79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.312

99.054

0.924