Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   U4V76_RS03375 Genome accession   NZ_CP140485
Coordinates   641149..641586 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain PNUSAC038549     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 636149..646586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4V76_RS03355 (U4V76_03355) kdpD 636641..638461 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  U4V76_RS03360 (U4V76_03360) uvrB 638563..640536 (-) 1974 WP_002858504.1 excinuclease ABC subunit UvrB -
  U4V76_RS03365 (U4V76_03365) - 640690..640920 (+) 231 WP_002852327.1 hypothetical protein -
  U4V76_RS03370 (U4V76_03370) - 640910..641152 (+) 243 WP_002854947.1 hypothetical protein -
  U4V76_RS03375 (U4V76_03375) Cj0683 641149..641586 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  U4V76_RS03380 (U4V76_03380) priA 641568..643421 (+) 1854 WP_002858495.1 primosomal protein N' -
  U4V76_RS03385 (U4V76_03385) cipA 643431..644825 (-) 1395 WP_002916267.1 DUF2972 domain-containing protein -
  U4V76_RS03390 (U4V76_03390) ispG 644971..646044 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=914481 U4V76_RS03375 WP_002852324.1 641149..641586(+) (Cj0683) [Campylobacter jejuni strain PNUSAC038549]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=914481 U4V76_RS03375 WP_002852324.1 641149..641586(+) (Cj0683) [Campylobacter jejuni strain PNUSAC038549]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1