Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   SPH25_RS01700 Genome accession   NZ_CP140484
Coordinates   349565..349969 (+) Length   134 a.a.
NCBI ID   WP_000599247.1    Uniprot ID   -
Organism   Helicobacter pylori strain 52N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344565..354969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH25_RS01665 - 344744..345682 (-) 939 WP_000833932.1 tetraacyldisaccharide 4'-kinase -
  SPH25_RS01670 - 345679..346461 (-) 783 WP_001168283.1 NAD+ synthase -
  SPH25_RS01680 ilvC 346709..347701 (+) 993 WP_001207778.1 ketol-acid reductoisomerase -
  SPH25_RS01685 minD 347720..348526 (+) 807 WP_001019068.1 septum site-determining protein MinD -
  SPH25_RS01690 minE 348523..348756 (+) 234 WP_000051408.1 cell division topological specificity factor MinE -
  SPH25_RS01695 dprA 348768..349568 (+) 801 WP_000835227.1 DNA-processing protein DprA Machinery gene
  SPH25_RS01700 dprB 349565..349969 (+) 405 WP_000599247.1 Holliday junction resolvase RuvX Machinery gene
  SPH25_RS01705 - 350101..350409 (+) 309 WP_079990965.1 tetratricopeptide repeat protein -
  SPH25_RS01710 - 350318..350572 (+) 255 WP_079990919.1 tetratricopeptide repeat protein -
  SPH25_RS01715 - 350758..351063 (+) 306 WP_000699931.1 hypothetical protein -
  SPH25_RS01720 - 351047..351607 (+) 561 WP_322536494.1 hypothetical protein -
  SPH25_RS01725 - 351663..352037 (+) 375 WP_014533409.1 glycoside hydrolase family protein -
  SPH25_RS01730 - 352025..352291 (+) 267 WP_014533410.1 hypothetical protein -
  SPH25_RS01735 - 352583..352967 (+) 385 Protein_340 DUF1294 domain-containing protein -
  SPH25_RS01740 - 352967..353752 (+) 786 WP_000458573.1 hypothetical protein -
  SPH25_RS01745 - 353742..354014 (+) 273 WP_322536495.1 hypothetical protein -
  SPH25_RS01750 - 354124..354963 (+) 840 WP_001013455.1 pilin -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15275.70 Da        Isoelectric Point: 7.8024

>NTDB_id=914462 SPH25_RS01700 WP_000599247.1 349565..349969(+) (dprB) [Helicobacter pylori strain 52N]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFEGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=914462 SPH25_RS01700 WP_000599247.1 349565..349969(+) (dprB) [Helicobacter pylori strain 52N]
GTGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGCATTGCCGTGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTGAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963