Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6430_RS02890 Genome accession   NZ_AP025342
Coordinates   548491..548772 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain J41TS8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 543491..553772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS02870 smpB 544303..544776 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  L6430_RS02875 rnr 544892..547195 (-) 2304 WP_059230941.1 ribonuclease R -
  L6430_RS02880 - 547209..547955 (-) 747 WP_035337713.1 alpha/beta hydrolase -
  L6430_RS02885 secG 548096..548326 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  L6430_RS02890 abrB 548491..548772 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6430_RS02895 - 548801..549034 (-) 234 WP_164470226.1 helix-turn-helix domain-containing protein -
  L6430_RS02900 - 549187..549588 (+) 402 WP_026580121.1 transcriptional regulator -
  L6430_RS02905 - 549761..550159 (+) 399 WP_023856314.1 helix-turn-helix domain-containing protein -
  L6430_RS02910 - 550208..550885 (-) 678 WP_020452989.1 ABC transporter permease -
  L6430_RS02915 opuCC 550902..551819 (-) 918 WP_020452990.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  L6430_RS02920 - 551833..552486 (-) 654 WP_035337716.1 ABC transporter permease -
  L6430_RS02925 - 552508..553647 (-) 1140 WP_020452992.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=91438 L6430_RS02890 WP_020452985.1 548491..548772(-) (abrB) [Bacillus paralicheniformis strain J41TS8]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=91438 L6430_RS02890 WP_020452985.1 548491..548772(-) (abrB) [Bacillus paralicheniformis strain J41TS8]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCAGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548

Multiple sequence alignment