Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   U2S94_RS02325 Genome accession   NZ_CP140434
Coordinates   346111..346929 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2023CK-01274     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341111..351929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S94_RS02290 (U2S94_02290) - 341693..341823 (-) 131 Protein_306 hypothetical protein -
  U2S94_RS02295 (U2S94_02295) rpoZ 341862..342140 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U2S94_RS02300 (U2S94_02300) gmk 342213..342842 (-) 630 WP_000015937.1 guanylate kinase -
  U2S94_RS02305 (U2S94_02305) ispH 342965..343915 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U2S94_RS02310 (U2S94_02310) fimU 344085..344558 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U2S94_RS02315 (U2S94_02315) pilV 344552..345112 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  U2S94_RS02320 (U2S94_02320) pilW 345113..346114 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  U2S94_RS02325 (U2S94_02325) pilX 346111..346929 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U2S94_RS02330 (U2S94_02330) pilY1 346941..350795 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  U2S94_RS02335 (U2S94_02335) pilY2 350808..351290 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  U2S94_RS02340 (U2S94_02340) pilE 351287..351712 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=914269 U2S94_RS02325 WP_000149374.1 346111..346929(+) (pilX) [Acinetobacter baumannii strain 2023CK-01274]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=914269 U2S94_RS02325 WP_000149374.1 346111..346929(+) (pilX) [Acinetobacter baumannii strain 2023CK-01274]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993