Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   U2S93_RS09680 Genome accession   NZ_CP140431
Coordinates   2045029..2047788 (+) Length   919 a.a.
NCBI ID   WP_022580337.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2023CK-01249     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2040029..2052788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S93_RS09660 (U2S93_09660) - 2040664..2041425 (+) 762 WP_003091396.1 class I SAM-dependent methyltransferase -
  U2S93_RS09665 (U2S93_09665) leuB 2041484..2042566 (+) 1083 WP_003091395.1 3-isopropylmalate dehydrogenase -
  U2S93_RS09670 (U2S93_09670) asd 2042636..2043748 (+) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  U2S93_RS09675 (U2S93_09675) - 2043850..2044860 (+) 1011 WP_022580338.1 aspartate-semialdehyde dehydrogenase -
  U2S93_RS09680 (U2S93_09680) fimV 2045029..2047788 (+) 2760 WP_022580337.1 motility hub landmark protein FimV Machinery gene
  U2S93_RS09685 (U2S93_09685) truA 2047810..2048667 (+) 858 WP_015502643.1 tRNA pseudouridine(38-40) synthase TruA -
  U2S93_RS09690 (U2S93_09690) - 2048757..2049392 (+) 636 WP_003091389.1 phosphoribosylanthranilate isomerase -
  U2S93_RS09695 (U2S93_09695) accD 2049661..2050533 (+) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  U2S93_RS09700 (U2S93_09700) folC 2050530..2051819 (+) 1290 WP_022580336.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  U2S93_RS09705 (U2S93_09705) - 2051823..2052470 (+) 648 WP_023095368.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96869.16 Da        Isoelectric Point: 3.9481

>NTDB_id=914234 U2S93_RS09680 WP_022580337.1 2045029..2047788(+) (fimV) [Pseudomonas aeruginosa strain 2023CK-01249]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPVAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAALTAADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=914234 U2S93_RS09680 WP_022580337.1 2045029..2047788(+) (fimV) [Pseudomonas aeruginosa strain 2023CK-01249]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGTCGCCTGCTGCGTGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCGCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTTGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCTAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAACT
GGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCGCCGACTCCTGCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGTTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAACAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGCTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCTG
CGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGCTTC
AACCAGGCCGCCGAACTGTTGCAAAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGTGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTCGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCTGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTTGACCGCGGCGGACAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAGGTGCCCGCCGCGGCGCCAG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTATATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.238

100

0.992