Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ABXJ03_RS15830 Genome accession   NZ_CP159694
Coordinates   3269329..3270321 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain Z142-3     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3264329..3275321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ03_RS15805 (ABXJ03_15805) ygbN 3264984..3266348 (+) 1365 WP_000104439.1 GntP family transporter -
  ABXJ03_RS15810 (ABXJ03_15810) - 3266387..3266623 (-) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ABXJ03_RS15815 (ABXJ03_15815) - 3266634..3268061 (-) 1428 WP_000863223.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ABXJ03_RS15820 (ABXJ03_15820) - 3268061..3268654 (-) 594 WP_000767707.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ABXJ03_RS15825 (ABXJ03_15825) - 3268801..3269208 (+) 408 WP_001208070.1 MarR family transcriptional regulator -
  ABXJ03_RS15830 (ABXJ03_15830) rpoS 3269329..3270321 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ABXJ03_RS15835 (ABXJ03_15835) nlpD 3270384..3271478 (-) 1095 WP_311236279.1 murein hydrolase activator NlpD -
  ABXJ03_RS15840 (ABXJ03_15840) pcm 3271663..3272289 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ABXJ03_RS15845 (ABXJ03_15845) surE 3272283..3273044 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ABXJ03_RS15850 (ABXJ03_15850) truD 3273025..3274074 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  ABXJ03_RS15855 (ABXJ03_15855) ispF 3274071..3274550 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABXJ03_RS15860 (ABXJ03_15860) ispD 3274550..3275260 (-) 711 WP_000246136.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=914224 ABXJ03_RS15830 WP_000081550.1 3269329..3270321(-) (rpoS) [Escherichia coli strain Z142-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=914224 ABXJ03_RS15830 WP_000081550.1 3269329..3270321(-) (rpoS) [Escherichia coli strain Z142-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715