Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6450_RS17925 Genome accession   NZ_AP025340
Coordinates   3552674..3552964 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J36TS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3547674..3557964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS17885 - 3547697..3548026 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  L6450_RS17890 - 3548038..3548478 (+) 441 WP_020449792.1 YaaR family protein -
  L6450_RS17895 holB 3548490..3549479 (+) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  L6450_RS17900 - 3549482..3550309 (+) 828 WP_020449794.1 PSP1 domain-containing protein -
  L6450_RS17905 yabA 3550324..3550686 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  L6450_RS17910 - 3550751..3551494 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  L6450_RS17915 - 3551481..3551774 (+) 294 WP_020449797.1 GIY-YIG nuclease family protein -
  L6450_RS17920 rsmI 3551749..3552624 (+) 876 WP_041817399.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  L6450_RS17925 abrB 3552674..3552964 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6450_RS17930 metG 3553472..3555460 (+) 1989 WP_020449799.1 methionine--tRNA ligase -
  L6450_RS17935 - 3555544..3556311 (+) 768 WP_020449800.1 TatD family hydrolase -
  L6450_RS17940 - 3556556..3557752 (+) 1197 WP_020449801.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=91422 L6450_RS17925 WP_085959887.1 3552674..3552964(-) (abrB) [Bacillus paralicheniformis strain J36TS2]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=91422 L6450_RS17925 WP_085959887.1 3552674..3552964(-) (abrB) [Bacillus paralicheniformis strain J36TS2]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment