Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U2S75_RS01400 Genome accession   NZ_CP140420
Coordinates   293049..293375 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 288049..298375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS01375 (U2S75_01375) hemC 288666..289583 (+) 918 WP_031945568.1 hydroxymethylbilane synthase -
  U2S75_RS01380 (U2S75_01380) - 289588..290355 (+) 768 WP_064191961.1 uroporphyrinogen-III synthase -
  U2S75_RS01385 (U2S75_01385) - 290364..291203 (+) 840 WP_001230201.1 hypothetical protein -
  U2S75_RS01390 (U2S75_01390) - 291213..292406 (+) 1194 WP_000681775.1 membrane protein -
  U2S75_RS01395 (U2S75_01395) - 292414..292854 (+) 441 WP_000661569.1 thioesterase family protein -
  U2S75_RS01400 (U2S75_01400) hns 293049..293375 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  U2S75_RS01405 (U2S75_01405) gspN 293708..294451 (+) 744 WP_064191967.1 type II secretion system protein N -
  U2S75_RS01410 (U2S75_01410) - 294451..295287 (+) 837 WP_000870031.1 type II secretion system protein N -
  U2S75_RS01415 (U2S75_01415) gspD 295329..297605 (+) 2277 WP_024432837.1 type II secretion system secretin GspD -
  U2S75_RS01420 (U2S75_01420) - 297646..298275 (+) 630 WP_064191965.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=914163 U2S75_RS01400 WP_000801427.1 293049..293375(+) (hns) [Acinetobacter baumannii strain 2023CK-00893]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=914163 U2S75_RS01400 WP_000801427.1 293049..293375(+) (hns) [Acinetobacter baumannii strain 2023CK-00893]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1