Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6450_RS14075 Genome accession   NZ_AP025340
Coordinates   2761429..2761710 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain J36TS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2756429..2766710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS14055 smpB 2757241..2757714 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  L6450_RS14060 rnr 2757830..2760133 (-) 2304 WP_020452983.1 ribonuclease R -
  L6450_RS14065 - 2760147..2760893 (-) 747 WP_020452984.1 alpha/beta hydrolase -
  L6450_RS14070 secG 2761034..2761264 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  L6450_RS14075 abrB 2761429..2761710 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6450_RS14080 - 2761739..2761972 (-) 234 WP_164470226.1 helix-turn-helix domain-containing protein -
  L6450_RS14085 - 2762125..2762526 (+) 402 WP_020452987.1 transcriptional regulator -
  L6450_RS14090 - 2762699..2763097 (+) 399 WP_023856314.1 helix-turn-helix domain-containing protein -
  L6450_RS14095 - 2763146..2763823 (-) 678 WP_020452989.1 ABC transporter permease -
  L6450_RS14100 opuCC 2763840..2764757 (-) 918 WP_020452990.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  L6450_RS14105 - 2764771..2765424 (-) 654 WP_020452991.1 ABC transporter permease -
  L6450_RS14110 - 2765446..2766585 (-) 1140 WP_020452992.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=91407 L6450_RS14075 WP_020452985.1 2761429..2761710(-) (abrB) [Bacillus paralicheniformis strain J36TS2]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=91407 L6450_RS14075 WP_020452985.1 2761429..2761710(-) (abrB) [Bacillus paralicheniformis strain J36TS2]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCAGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548

Multiple sequence alignment