Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ABXJ13_RS10620 Genome accession   NZ_CP159689
Coordinates   2108975..2109967 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain Z142-6     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2103975..2114967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ13_RS10590 (ABXJ13_10590) ispD 2104108..2104818 (+) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABXJ13_RS10595 (ABXJ13_10595) ispF 2104818..2105297 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABXJ13_RS10600 (ABXJ13_10600) truD 2105294..2106343 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  ABXJ13_RS10605 (ABXJ13_10605) surE 2106324..2107085 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ABXJ13_RS10610 (ABXJ13_10610) pcm 2107079..2107705 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ABXJ13_RS10615 (ABXJ13_10615) nlpD 2107890..2108912 (+) 1023 WP_311318928.1 murein hydrolase activator NlpD -
  ABXJ13_RS10620 (ABXJ13_10620) rpoS 2108975..2109967 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ABXJ13_RS10625 (ABXJ13_10625) - 2110088..2110495 (-) 408 WP_001208070.1 MarR family transcriptional regulator -
  ABXJ13_RS10630 (ABXJ13_10630) - 2110642..2111235 (+) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ABXJ13_RS10635 (ABXJ13_10635) - 2111235..2112662 (+) 1428 WP_260248635.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ABXJ13_RS10640 (ABXJ13_10640) - 2112673..2112909 (+) 237 WP_000562991.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ABXJ13_RS10645 (ABXJ13_10645) ygbN 2112949..2114313 (-) 1365 WP_000104429.1 GntP family transporter -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=914062 ABXJ13_RS10620 WP_000081550.1 2108975..2109967(+) (rpoS) [Escherichia coli strain Z142-6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=914062 ABXJ13_RS10620 WP_000081550.1 2108975..2109967(+) (rpoS) [Escherichia coli strain Z142-6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715