Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   U2S82_RS07275 Genome accession   NZ_CP140398
Coordinates   1417617..1417928 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain PNUSAC038377     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412617..1422928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S82_RS07255 (U2S82_07255) ctsE 1413486..1415045 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  U2S82_RS07260 (U2S82_07260) ctsX 1415035..1415622 (-) 588 WP_002851370.1 membrane protein Machinery gene
  U2S82_RS07265 (U2S82_07265) ctsP 1415626..1416234 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  U2S82_RS07270 (U2S82_07270) ctsD 1416227..1417639 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  U2S82_RS07275 (U2S82_07275) ctsR 1417617..1417928 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  U2S82_RS07280 (U2S82_07280) nifJ 1417952..1421512 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  U2S82_RS07285 (U2S82_07285) - 1421605..1422246 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=913997 U2S82_RS07275 WP_002855438.1 1417617..1417928(-) (ctsR) [Campylobacter jejuni strain PNUSAC038377]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=913997 U2S82_RS07275 WP_002855438.1 1417617..1417928(-) (ctsR) [Campylobacter jejuni strain PNUSAC038377]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1