Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   U2S87_RS07260 Genome accession   NZ_CP140374
Coordinates   1415037..1415624 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain PNUSAC039152     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410037..1420624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S87_RS07240 (U2S87_07240) - 1410785..1411549 (+) 765 WP_002894096.1 TIGR02757 family protein -
  U2S87_RS07245 (U2S87_07245) - 1411553..1412317 (+) 765 WP_002855821.1 TSUP family transporter -
  U2S87_RS07250 (U2S87_07250) ctsF 1412310..1413491 (-) 1182 WP_002894094.1 type II secretion system F family protein Machinery gene
  U2S87_RS07255 (U2S87_07255) ctsE 1413488..1415047 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  U2S87_RS07260 (U2S87_07260) ctsX 1415037..1415624 (-) 588 WP_002851370.1 membrane protein Machinery gene
  U2S87_RS07265 (U2S87_07265) ctsP 1415628..1416236 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  U2S87_RS07270 (U2S87_07270) ctsD 1416229..1417641 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  U2S87_RS07275 (U2S87_07275) ctsR 1417619..1417930 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=913832 U2S87_RS07260 WP_002851370.1 1415037..1415624(-) (ctsX) [Campylobacter jejuni strain PNUSAC039152]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=913832 U2S87_RS07260 WP_002851370.1 1415037..1415624(-) (ctsX) [Campylobacter jejuni strain PNUSAC039152]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1