Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABXJ31_RS12200 Genome accession   NZ_CP159644
Coordinates   2474218..2474694 (+) Length   158 a.a.
NCBI ID   WP_354142871.1    Uniprot ID   -
Organism   Escherichia coli strain Z226-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2469218..2479694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ31_RS12160 (ABXJ31_12160) - 2469427..2470290 (+) 864 WP_001568592.1 GTPase family protein -
  ABXJ31_RS12165 (ABXJ31_12165) - 2470382..2471202 (+) 821 Protein_2382 DUF932 domain-containing protein -
  ABXJ31_RS12170 (ABXJ31_12170) yfjR 2471419..2472120 (+) 702 WP_354142870.1 WYL domain-containing protein -
  ABXJ31_RS12175 (ABXJ31_12175) ypjK 2472161..2472397 (+) 237 WP_001144031.1 protein YpjK -
  ABXJ31_RS12180 (ABXJ31_12180) - 2472397..2472840 (+) 444 WP_000649865.1 YfjS/YafY family lipoprotein -
  ABXJ31_RS12185 (ABXJ31_12185) ykfB 2472863..2473330 (+) 468 WP_001385283.1 protein YkfB -
  ABXJ31_RS12190 (ABXJ31_12190) ykfF 2473407..2473646 (+) 240 WP_000194654.1 DUF905 family protein -
  ABXJ31_RS12195 (ABXJ31_12195) yafX 2473744..2474202 (+) 459 WP_000211838.1 antirestriction protein -
  ABXJ31_RS12200 (ABXJ31_12200) radC 2474218..2474694 (+) 477 WP_354142871.1 RadC family protein Machinery gene
  ABXJ31_RS12205 (ABXJ31_12205) ykfH 2474703..2474924 (+) 222 WP_000691994.1 DUF987 domain-containing protein -
  ABXJ31_RS12210 (ABXJ31_12210) yafW 2474943..2475260 (+) 318 WP_000070396.1 type IV toxin-antitoxin system antitoxin YafW -
  ABXJ31_RS12215 (ABXJ31_12215) ykfI 2475281..2475622 (+) 342 WP_000854680.1 type IV toxin-antitoxin system toxin YkfI -
  ABXJ31_RS12220 (ABXJ31_12220) - 2476201..2476569 (-) 369 WP_060659174.1 TA system toxin CbtA family protein -
  ABXJ31_RS12225 (ABXJ31_12225) - 2476590..2476907 (-) 318 WP_060659175.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABXJ31_RS12230 (ABXJ31_12230) - 2476927..2477148 (-) 222 WP_047738075.1 DUF987 domain-containing protein -
  ABXJ31_RS12235 (ABXJ31_12235) radC 2477157..2477639 (-) 483 WP_060659176.1 DNA repair protein RadC -
  ABXJ31_RS12240 (ABXJ31_12240) - 2477648..2478112 (-) 465 WP_354142872.1 antirestriction protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18045.73 Da        Isoelectric Point: 7.6553

>NTDB_id=913816 ABXJ31_RS12200 WP_354142871.1 2474218..2474694(+) (radC) [Escherichia coli strain Z226-5]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INCTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=913816 ABXJ31_RS12200 WP_354142871.1 2474218..2474694(+) (radC) [Escherichia coli strain Z226-5]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAACGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACTGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38