Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   U2S96_RS07240 Genome accession   NZ_CP140370
Coordinates   1412256..1413437 (-) Length   393 a.a.
NCBI ID   WP_002894094.1    Uniprot ID   A0A1J6L696
Organism   Campylobacter jejuni strain PNUSAC040311     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407256..1418437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S96_RS07210 (U2S96_07210) - 1407801..1408142 (+) 342 WP_002784057.1 hypothetical protein -
  U2S96_RS07215 (U2S96_07215) flgM 1408205..1408402 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  U2S96_RS07220 (U2S96_07220) - 1408444..1408878 (+) 435 WP_002779263.1 flagellar protein FlgN -
  U2S96_RS07225 (U2S96_07225) flgK 1408888..1410714 (+) 1827 WP_002894098.1 flagellar hook-associated protein FlgK -
  U2S96_RS07230 (U2S96_07230) - 1410731..1411495 (+) 765 WP_002894096.1 TIGR02757 family protein -
  U2S96_RS07235 (U2S96_07235) - 1411499..1412263 (+) 765 WP_002855821.1 TSUP family transporter -
  U2S96_RS07240 (U2S96_07240) ctsF 1412256..1413437 (-) 1182 WP_002894094.1 type II secretion system F family protein Machinery gene
  U2S96_RS07245 (U2S96_07245) ctsE 1413434..1414993 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  U2S96_RS07250 (U2S96_07250) ctsX 1414983..1415570 (-) 588 WP_002851370.1 membrane protein Machinery gene
  U2S96_RS07255 (U2S96_07255) ctsP 1415574..1416182 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  U2S96_RS07260 (U2S96_07260) ctsD 1416175..1417587 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  U2S96_RS07265 (U2S96_07265) ctsR 1417565..1417876 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45736.38 Da        Isoelectric Point: 9.2540

>NTDB_id=913803 U2S96_RS07240 WP_002894094.1 1412256..1413437(-) (ctsF) [Campylobacter jejuni strain PNUSAC040311]
MKFYEVEFLKNNQNYTKTIKAENLNIAQTKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=913803 U2S96_RS07240 WP_002894094.1 1412256..1413437(-) (ctsF) [Campylobacter jejuni strain PNUSAC040311]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAACAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6L696

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977