Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AABK05_RS17930 Genome accession   NZ_AP027877
Coordinates   3674550..3675029 (+) Length   159 a.a.
NCBI ID   WP_000437750.1    Uniprot ID   -
Organism   Escherichia coli strain 2018-05-2CC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3669550..3680029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK05_RS17895 - 3670033..3670736 (+) 704 Protein_3502 WYL domain-containing protein -
  AABK05_RS17900 (VEE46_34720) - 3670733..3671368 (+) 636 WP_000772020.1 hypothetical protein -
  AABK05_RS17905 (VEE46_34730) - 3671404..3671856 (+) 453 WP_001020418.1 YfjS/YafY family lipoprotein -
  AABK05_RS17910 (VEE46_34740) - 3671853..3672305 (+) 453 WP_004011054.1 hypothetical protein -
  AABK05_RS17915 (VEE46_34750) - 3672368..3672910 (+) 543 WP_338387825.1 DUF4339 domain-containing protein -
  AABK05_RS17920 (VEE46_34760) - 3673045..3673800 (+) 756 Protein_3507 DUF932 domain-containing protein -
  AABK05_RS17925 (VEE46_34770) - 3674068..3674538 (+) 471 WP_000131762.1 antirestriction protein -
  AABK05_RS17930 (VEE46_34780) radC 3674550..3675029 (+) 480 WP_000437750.1 DNA repair protein RadC Machinery gene
  AABK05_RS17935 (VEE46_34790) - 3675050..3675271 (+) 222 WP_000691981.1 DUF987 domain-containing protein -
  AABK05_RS17940 (VEE46_34800) - 3675295..3675654 (+) 360 WP_000066236.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AABK05_RS17945 (VEE46_34810) - 3675705..3676082 (+) 378 WP_023280984.1 TA system toxin CbtA family protein -
  AABK05_RS17950 (VEE46_34820) - 3676079..3676570 (+) 492 WP_000777682.1 DUF5983 family protein -
  AABK05_RS17955 (VEE46_34830) - 3676602..3676805 (+) 204 WP_000413747.1 DUF957 domain-containing protein -
  AABK05_RS17960 - 3676886..3677730 (+) 845 Protein_3515 DUF4942 domain-containing protein -
  AABK05_RS17970 (VEE46_34860) dnaQ 3678072..3678803 (-) 732 WP_001366128.1 DNA polymerase III subunit epsilon -
  AABK05_RS17975 (VEE46_34870) rnhA 3678868..3679335 (+) 468 WP_000917883.1 ribonuclease HI -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17833.29 Da        Isoelectric Point: 6.5823

>NTDB_id=91377 AABK05_RS17930 WP_000437750.1 3674550..3675029(+) (radC) [Escherichia coli strain 2018-05-2CC]
MEQQLPLFARELAPADQQTVRKALSLLECQLRETGASFTSSHAVRDWLRLQLASLEREEFTALFLDNQHRLIAHETLFTG
TINHTQVHPREVVKAGLKHNCAAVIVAHSHPSGEAEPSKADRQVTTRIQQALDLVDIRLLDHLVVGGMEITSFADRGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=91377 AABK05_RS17930 WP_000437750.1 3674550..3675029(+) (radC) [Escherichia coli strain 2018-05-2CC]
ATGGAGCAACAGTTACCGTTGTTTGCCCGTGAATTAGCCCCTGCCGACCAGCAGACAGTCAGGAAAGCCTTATCTCTGCT
GGAGTGCCAGCTACGTGAAACCGGCGCGTCATTTACTTCCAGCCATGCTGTCCGCGACTGGCTGCGCCTGCAGCTCGCGT
CACTGGAGCGGGAAGAGTTTACCGCGCTCTTTCTCGATAACCAGCATCGCCTGATAGCCCACGAAACGCTATTTACCGGC
ACCATCAACCATACGCAGGTCCATCCCCGCGAAGTGGTGAAGGCCGGTCTGAAGCATAACTGCGCCGCTGTCATTGTCGC
CCATAGCCATCCCTCCGGGGAGGCTGAACCCAGCAAGGCAGACCGTCAGGTCACTACGCGTATTCAGCAGGCGCTGGACC
TGGTTGATATCCGCTTGCTGGACCACCTGGTGGTCGGCGGCATGGAGATCACCTCGTTTGCAGATCGTGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.724

72.956

0.377

Multiple sequence alignment