Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ABXJ28_RS16790 Genome accession   NZ_CP159641
Coordinates   3330147..3330662 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain Z226-6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3325147..3335662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ28_RS16745 (ABXJ28_16745) csrA 3325734..3325919 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  ABXJ28_RS16775 (ABXJ28_16775) yqaB 3327377..3327943 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ABXJ28_RS16780 (ABXJ28_16780) yqaA 3327940..3328368 (+) 429 WP_001287454.1 YqaA family protein -
  ABXJ28_RS16785 (ABXJ28_16785) gshA 3328441..3329997 (+) 1557 WP_354142697.1 glutamate--cysteine ligase -
  ABXJ28_RS16790 (ABXJ28_16790) luxS 3330147..3330662 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ABXJ28_RS16795 (ABXJ28_16795) emrB 3330726..3332264 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  ABXJ28_RS16800 (ABXJ28_16800) emrA 3332281..3333453 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ABXJ28_RS16805 (ABXJ28_16805) emrR 3333580..3334110 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ABXJ28_RS16810 (ABXJ28_16810) ygaH 3334201..3334536 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  ABXJ28_RS16815 (ABXJ28_16815) ygaZ 3334526..3335263 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=913765 ABXJ28_RS16790 WP_001130211.1 3330147..3330662(+) (luxS) [Escherichia coli strain Z226-6]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=913765 ABXJ28_RS16790 WP_001130211.1 3330147..3330662(+) (luxS) [Escherichia coli strain Z226-6]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731