Detailed information NTG0913762

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABXJ28_RS16500
• Genome accession: NZ_CP159641
• Coordinates: 3275762..3276754 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Z226-6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3270762..3281754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXJ28_RS16470 (ABXJ28_16470)	ispD	3270823..3271533 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABXJ28_RS16475 (ABXJ28_16475)	ispF	3271533..3272012 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABXJ28_RS16480 (ABXJ28_16480)	truD	3272009..3273058 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABXJ28_RS16485 (ABXJ28_16485)	surE	3273039..3273800 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABXJ28_RS16490 (ABXJ28_16490)	pcm	3273794..3274420 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABXJ28_RS16495 (ABXJ28_16495)	nlpD	3274605..3275699 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABXJ28_RS16500 (ABXJ28_16500)	rpoS	3275762..3276754 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABXJ28_RS16505 (ABXJ28_16505)	ygbN	3276848..3278212 (-)	1365	WP_000104429.1	GntP family transporter	-
ABXJ28_RS16510 (ABXJ28_16510)	ygbM	3278301..3279077 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ABXJ28_RS16515 (ABXJ28_16515)	ygbL	3279082..3279720 (-)	639	WP_001278994.1	aldolase	-
ABXJ28_RS16520 (ABXJ28_16520)	otnK	3279717..3280979 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=913762 ABXJ28_RS16500 WP_000081550.1 3275762..3276754(+) (rpoS) [Escherichia coli strain Z226-6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=913762 ABXJ28_RS16500 WP_000081550.1 3275762..3276754(+) (rpoS) [Escherichia coli strain Z226-6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715