Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   U2S83_RS07220 Genome accession   NZ_CP140362
Coordinates   1413492..1413803 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain PNUSAC038379     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408492..1418803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S83_RS07200 (U2S83_07225) ctsE 1409361..1410920 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  U2S83_RS07205 (U2S83_07230) ctsX 1410910..1411497 (-) 588 WP_002851370.1 membrane protein Machinery gene
  U2S83_RS07210 (U2S83_07235) ctsP 1411501..1412109 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  U2S83_RS07215 (U2S83_07240) ctsD 1412102..1413514 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  U2S83_RS07220 (U2S83_07245) ctsR 1413492..1413803 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  U2S83_RS07225 (U2S83_07250) nifJ 1413827..1417387 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  U2S83_RS07230 (U2S83_07255) - 1417480..1418121 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=913754 U2S83_RS07220 WP_002855438.1 1413492..1413803(-) (ctsR) [Campylobacter jejuni strain PNUSAC038379]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=913754 U2S83_RS07220 WP_002855438.1 1413492..1413803(-) (ctsR) [Campylobacter jejuni strain PNUSAC038379]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1