Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ABXJ28_RS10600 Genome accession   NZ_CP159641
Coordinates   2066706..2067731 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain Z226-6     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2061706..2072731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ28_RS10575 (ABXJ28_10575) metJ 2062143..2062460 (+) 318 WP_000852812.1 met regulon transcriptional regulator MetJ -
  ABXJ28_RS10580 (ABXJ28_10580) yiiX 2062644..2063252 (+) 609 WP_000797341.1 YiiX family permuted papain-like enzyme -
  ABXJ28_RS10585 (ABXJ28_10585) - 2063259..2063882 (+) 624 WP_354142919.1 TIGR02117 family protein -
  ABXJ28_RS10590 (ABXJ28_10590) rpmE 2063937..2064149 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  ABXJ28_RS10595 (ABXJ28_10595) priA 2064352..2066550 (+) 2199 WP_001295520.1 primosomal protein N' Machinery gene
  ABXJ28_RS10600 (ABXJ28_10600) cytR 2066706..2067731 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  ABXJ28_RS10605 (ABXJ28_10605) ftsN 2067823..2068782 (+) 960 WP_071598226.1 cell division protein FtsN -
  ABXJ28_RS10610 (ABXJ28_10610) hslV 2068875..2069405 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ABXJ28_RS10615 (ABXJ28_10615) hslU 2069415..2070746 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  ABXJ28_RS10620 (ABXJ28_10620) menA 2070813..2071739 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABXJ28_RS10625 (ABXJ28_10625) rraA 2071832..2072317 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ABXJ28_RS10630 (ABXJ28_10630) zapB 2072402..2072647 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=913734 ABXJ28_RS10600 WP_000644904.1 2066706..2067731(+) (cytR) [Escherichia coli strain Z226-6]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=913734 ABXJ28_RS10600 WP_000644904.1 2066706..2067731(+) (cytR) [Escherichia coli strain Z226-6]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCAGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628