Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABXJ28_RS03080 Genome accession   NZ_CP159641
Coordinates   518172..518801 (-) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   -
Organism   Escherichia coli strain Z226-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 513172..523801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ28_RS03065 (ABXJ28_03065) helD 513414..515468 (-) 2055 WP_354142914.1 DNA helicase IV -
  ABXJ28_RS03070 (ABXJ28_03070) yccF 515591..516037 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABXJ28_RS03075 (ABXJ28_03075) yccS 516047..518209 (+) 2163 WP_354142813.1 YccS family putative transporter -
  ABXJ28_RS03080 (ABXJ28_03080) sxy/tfoX 518172..518801 (-) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABXJ28_RS03085 (ABXJ28_03085) sulA 519020..519529 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABXJ28_RS03090 (ABXJ28_03090) ompA 519886..520938 (+) 1053 WP_000750419.1 porin OmpA -
  ABXJ28_RS03095 (ABXJ28_03095) matP 521013..521465 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ABXJ28_RS03100 (ABXJ28_03100) ycbZ 521651..523411 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=913709 ABXJ28_RS03080 WP_000793792.1 518172..518801(-) (sxy/tfoX) [Escherichia coli strain Z226-6]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=913709 ABXJ28_RS03080 WP_000793792.1 518172..518801(-) (sxy/tfoX) [Escherichia coli strain Z226-6]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGCGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995