Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   U2S86_RS07255 Genome accession   NZ_CP140354
Coordinates   1415231..1415542 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain PNUSAC039151     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410231..1420542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S86_RS07235 (U2S86_07235) ctsE 1411100..1412659 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  U2S86_RS07240 (U2S86_07240) ctsX 1412649..1413236 (-) 588 WP_002851370.1 membrane protein Machinery gene
  U2S86_RS07245 (U2S86_07245) ctsP 1413240..1413848 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  U2S86_RS07250 (U2S86_07250) ctsD 1413841..1415253 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  U2S86_RS07255 (U2S86_07255) ctsR 1415231..1415542 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  U2S86_RS07260 (U2S86_07260) nifJ 1415566..1419126 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  U2S86_RS07265 (U2S86_07265) - 1419219..1419860 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=913700 U2S86_RS07255 WP_002855438.1 1415231..1415542(-) (ctsR) [Campylobacter jejuni strain PNUSAC039151]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=913700 U2S86_RS07255 WP_002855438.1 1415231..1415542(-) (ctsR) [Campylobacter jejuni strain PNUSAC039151]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1