Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABXJ10_RS08415 Genome accession   NZ_CP159639
Coordinates   1779822..1780451 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z226-7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774822..1785451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ10_RS08395 (ABXJ10_08395) ycbZ 1775222..1776982 (-) 1761 WP_000156473.1 Lon protease family protein -
  ABXJ10_RS08400 (ABXJ10_08400) matP 1777168..1777620 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABXJ10_RS08405 (ABXJ10_08405) ompA 1777697..1778737 (-) 1041 WP_022645481.1 porin OmpA -
  ABXJ10_RS08410 (ABXJ10_08410) sulA 1779094..1779603 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  ABXJ10_RS08415 (ABXJ10_08415) sxy/tfoX 1779822..1780451 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABXJ10_RS08420 (ABXJ10_08420) yccS 1780414..1782576 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ABXJ10_RS08425 (ABXJ10_08425) yccF 1782586..1783032 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ABXJ10_RS08430 (ABXJ10_08430) helD 1783155..1785209 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=913649 ABXJ10_RS08415 WP_000839153.1 1779822..1780451(+) (sxy/tfoX) [Escherichia coli strain Z226-7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=913649 ABXJ10_RS08415 WP_000839153.1 1779822..1780451(+) (sxy/tfoX) [Escherichia coli strain Z226-7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1