Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   U2S88_RS07210 Genome accession   NZ_CP140346
Coordinates   1409604..1411163 (-) Length   519 a.a.
NCBI ID   WP_021137528.1    Uniprot ID   A0A1J6KEY3
Organism   Campylobacter jejuni strain PNUSAC039261     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1404604..1416163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S88_RS07185 (U2S88_07210) - 1404614..1405048 (+) 435 WP_002779263.1 flagellar protein FlgN -
  U2S88_RS07190 (U2S88_07215) flgK 1405058..1406884 (+) 1827 WP_002894098.1 flagellar hook-associated protein FlgK -
  U2S88_RS07195 (U2S88_07220) - 1406901..1407665 (+) 765 WP_002894096.1 TIGR02757 family protein -
  U2S88_RS07200 (U2S88_07225) - 1407669..1408433 (+) 765 WP_002855821.1 TSUP family transporter -
  U2S88_RS07205 (U2S88_07230) ctsF 1408426..1409607 (-) 1182 WP_002894094.1 type II secretion system F family protein Machinery gene
  U2S88_RS07210 (U2S88_07235) ctsE 1409604..1411163 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  U2S88_RS07215 (U2S88_07240) ctsX 1411153..1411740 (-) 588 WP_002851370.1 membrane protein Machinery gene
  U2S88_RS07220 (U2S88_07245) ctsP 1411744..1412352 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  U2S88_RS07225 (U2S88_07250) ctsD 1412345..1413757 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  U2S88_RS07230 (U2S88_07255) ctsR 1413735..1414046 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60079.94 Da        Isoelectric Point: 6.2444

>NTDB_id=913642 U2S88_RS07210 WP_021137528.1 1409604..1411163(-) (ctsE) [Campylobacter jejuni strain PNUSAC039261]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLHKLNLGDKNLKILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQN
KTILMELAKKHGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=913642 U2S88_RS07210 WP_021137528.1 1409604..1411163(-) (ctsE) [Campylobacter jejuni strain PNUSAC039261]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTGCATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACGCAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGCATAAACTAAATCT
TGGAGATAAAAATTTAAAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATCTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTTAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATCCGGGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGCACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTAAGTCTTGTTATAGCGCAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGCAA
ACAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGCCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAATGCTTAGAGATCAATGAAGATTTGGCTTGTGCAATTAGGGAAAATCAAAAT
AAAACGATTTTAATGGAGCTTGCAAAAAAACATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6KEY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.037

100

0.99