Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   U2S88_RS02955 Genome accession   NZ_CP140346
Coordinates   556053..556703 (-) Length   216 a.a.
NCBI ID   WP_002894415.1    Uniprot ID   A0A5T1LTI3
Organism   Campylobacter jejuni strain PNUSAC039261     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 551053..561703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S88_RS02920 (U2S88_02920) - 551431..552435 (+) 1005 WP_024088100.1 hypothetical protein -
  U2S88_RS02925 (U2S88_02925) tlyA 552432..553193 (+) 762 WP_002868894.1 TlyA family RNA methyltransferase -
  U2S88_RS02930 (U2S88_02930) ribF 553159..554013 (+) 855 WP_322631858.1 bifunctional riboflavin kinase/FAD synthetase -
  U2S88_RS02935 (U2S88_02935) cmoA 554000..554710 (+) 711 WP_079254181.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  U2S88_RS02940 (U2S88_02940) - 554700..554921 (-) 222 WP_079005306.1 EexN family lipoprotein -
  U2S88_RS02945 (U2S88_02945) - 554912..555352 (-) 441 WP_002868898.1 EexN family lipoprotein -
  U2S88_RS02950 (U2S88_02950) - 555410..556042 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  U2S88_RS02955 (U2S88_02955) CJE0566 556053..556703 (-) 651 WP_002894415.1 DNA/RNA non-specific endonuclease Regulator
  U2S88_RS02960 (U2S88_02960) nth 556700..557326 (-) 627 WP_002894412.1 endonuclease III -
  U2S88_RS02965 (U2S88_02965) peb4 557407..558228 (+) 822 WP_002894409.1 peptidylprolyl isomerase PEB4 -
  U2S88_RS02970 (U2S88_02970) fbaA 558228..559292 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  U2S88_RS02975 (U2S88_02975) - 559387..560829 (+) 1443 WP_002894406.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25417.08 Da        Isoelectric Point: 9.4459

>NTDB_id=913626 U2S88_RS02955 WP_002894415.1 556053..556703(-) (CJE0566) [Campylobacter jejuni strain PNUSAC039261]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DVNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNCIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=913626 U2S88_RS02955 WP_002894415.1 556053..556703(-) (CJE0566) [Campylobacter jejuni strain PNUSAC039261]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATGTAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACTGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1LTI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.036

91.204

0.63
  CJE1441 Campylobacter jejuni RM1221

68.528

91.204

0.625