Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   U3P88_RS18490 Genome accession   NZ_CP140297
Coordinates   3802494..3803072 (+) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3797494..3808072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS18470 (U3P88_18470) - 3797995..3799287 (-) 1293 WP_061861325.1 globin-coupled sensor protein -
  U3P88_RS18475 (U3P88_18475) - 3799409..3800932 (-) 1524 WP_015417167.1 FAD-dependent oxidoreductase -
  U3P88_RS18480 (U3P88_18480) - 3801057..3801914 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  U3P88_RS18485 (U3P88_18485) - 3801945..3802178 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  U3P88_RS18490 (U3P88_18490) comK 3802494..3803072 (+) 579 WP_012117234.1 competence protein ComK Regulator
  U3P88_RS18495 (U3P88_18495) - 3803217..3803585 (+) 369 WP_012117235.1 iron chaperone -
  U3P88_RS18500 (U3P88_18500) - 3803612..3803983 (+) 372 WP_061861326.1 iron chaperone -
  U3P88_RS18505 (U3P88_18505) - 3804106..3804615 (+) 510 WP_061861327.1 MepB family protein -
  U3P88_RS18510 (U3P88_18510) - 3804844..3805554 (-) 711 WP_053573542.1 YrpD family protein -
  U3P88_RS18515 (U3P88_18515) - 3805750..3806019 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  U3P88_RS18520 (U3P88_18520) - 3806052..3806369 (-) 318 WP_003155166.1 YbjQ family protein -
  U3P88_RS18525 (U3P88_18525) - 3806411..3807880 (-) 1470 WP_061861328.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=913572 U3P88_RS18490 WP_012117234.1 3802494..3803072(+) (comK) [Bacillus velezensis strain UMAF6639]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=913572 U3P88_RS18490 WP_012117234.1 3802494..3803072(+) (comK) [Bacillus velezensis strain UMAF6639]
ATGTGCCAGAAAACACATGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGTATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACATTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828